Co-option of EDM2 to distinct regulatory modules in Arabidopsis thalianadevelopment

BMC Plant Biology

Table 1 Sets of genes found to be differentially expressed in edm2 or wnk8 mutants by microarray experiments

#	gene set name*	Definition**	number of genes***
1	EDM2-induced	Col-0 >edm2-2	116
2	EDM2-suppressed	edm2-2 > Col-0	106
3	Core EDM2-induced	Col-0 >edm2-2 AND pXVE:HA-EDM2-a > edm2-2	9
4	core EDM2-suppressed	edm2-2 > Col-0 AND edm2-2 >pXVE:HA-EDM2-a	37
5	WNK8-induced	Col-0 >wnk8-1 AND Col-0 >wnk8-2 AND Col-0 >wnk8-3	302
6	WNK8-suppressed	wnk8-1 > Col-0 AND wnk8-2 > Col-0 AND wnk8-3 > Col-0	88
7	EDM2 &WNK8-induced	set1 AND set 5	66
8	EDM2 &WNK8-suppressed	set2 AND set 6	15
9	only EDM2-induced	set1 NOT set5	50
10	only EDM2-suppressed	set2 NOT set 6	91
11	only WNK8-induced	set5 NOT set1	236
12	only WNK8-suppressed	set6 NOT set 2	73

*: refers to the effect of wild type EDM2 or WNK8 on expression of the respective gene set
**: refers to transcript levels of individual genes in the indicated genotypes or presence of genes in defined gene sets: "AND" and "NOT" are used according to Boolean logic.
***: the AGI numbers of these genes and their signal intensities are provided in Additional Files 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 and 12 (Tables S1 - S12).

ISSN: 1471-2229