Table 3 Colocation between QTLs and candidate genes related to kernel desiccation and ABA biosynthesis
From: QTLs and candidate genes for desiccation and abscisic acid content in maize kernels
QTL name | Class | Bin | Position | From-to | Candidate gene |
|---|---|---|---|---|---|
DW_80_2 *** | Growth | 1.04 | Â | 250-273 | Rab17-EST (241) |
FW_80_1 * | Desiccation | Â | 255 | 245-277 | Â |
Water_60_1 * | Desiccation | Â | 333 | 305-344 | NCED2(310) |
%DW_60_2 | Desiccation | 1.06 | 338 | 323-386 | Aquaporin (314) AIP3 (323) |
DW_80_3 | Desiccation | Â | 460 | 455-464 | Â |
FW_80_2 *** | Desiccation | 1.08-1.09 | 460 | 457-463 | NCED1 = Vp14(465) |
Water_80_1 *** | Desiccation | Â | 460 | 455-463 | Â |
ABA_embryo_30_1 | ABA content | Â | 222 | 215-232 | ZEP1(227) |
ABA_embryo_40_2 *** | ABA content | 2.04 | 226 | 219-234 | Â |
ABA_endosperm_40_1 *** | ABA content | Â | 230 | 224-237 | TIP2;1 (236) |
Slope_1 ** | Desiccation rate | Â | 237 | 235-241 | Â |
Slope_3 | Desiccation rate | 3.05 | 220 | 212-244 | Vp1 (209) |
Slope_4 | Desiccation rate | Â | 82 | 66-97 | PM37 (82) |
FW_30_1 * | Desiccation | 4.03 | 92 | 79-109 | Â |
FW_80_4 | Desiccation | Â | 130 | 124-142 | WSI724 (132) |
Water_80_3 *** | Desiccation | 4.04-4.05 | 132 | 124-132 | Â |
%DW_30_2 | Desiccation | 4.06 | 173 | 161-189 | PIP1;2 PIP1;4 (161) |
ABA_endosperm_60_2 | ABA content | 4.10 | 340 | 329-346 | ABI2 (334) |
%DW_80_2 * | Desiccation | Â | 44 | 33-58 | ZEP-EST(41) |
DW_30_2 | Growth | 5.01 | 48 | 40-61 | Â |
ABA_embryo_80_1 | ABA content | Â | 96 | 77-115 | CCD-EST (81) |
%DW_60_4 * | Desiccation | 5.02 | 102 | 83-122 | Rab28 (132) |
%DW_80_3 | Desiccation | Â | 312 | 304-322 | Â |
ABA_embryo_40_3 * | ABA content | 5.07 | Â | 302-322 | NCED5(311) |
DW_60_4 | Growth | Â | 317 | 304-327 | TIP2;2 (320) |
%DW_60_5 | Desiccation | 6.05 | 148 | 136-175 | Rab17-EST (138) |
Water_60_4 ** | Desiccation | Â | Â | 136-201 | Emb5 (138) |
Water_60_5 | Desiccation | Â | 167 | 163-173 | PIP1;5 (164) |
ABA_endosperm_30_2 ** | ABA content | 7.02 | 183 | 179-189 | PIP2;1 (164) PIP2;4 (164) PIP2;6 (164) |
ABA_endosperm_80_1 | ABA content | 7.03 | 244 | 236-288 | PSY3 (241) |
ABA_embryo_30_3 | ABA content | 7.05 | 383 | 365-402 | Rehydrin (380) |
Rate_30_40_2 *** | Desiccation rate | Â | Â | 370-396 | Â |
%DW_80_5 ** | Desiccation | 9.04 | 125 | 108-140 | Rab17-EST (150) |
ABA_embryo_60_1 | ABA content | Â | 135 | 120-149 | Â |
ABA_endosperm_80_2 | ABA content | 9.07 | 279 | 262-294 | CCD-EST(271) |
%DW_80_6 **** | Desiccation | Â | 291 | 269-314 | Â |