Table 4 Distribution of annotated ESTs among MIPS functional categories.
Functional category | RindPdigS | RindPdig24 | A. thaliana |
|---|---|---|---|
Metabolism | 37.6 | 27.7 | 17.3 |
Energy | 3.6 | 5.5 | 1.6 |
Storage protein | 0.0 | 0.1 | 0.2 |
Cell cycle and DNA processing | 2.4 | 4.2 | 5.3 |
Transcription | 1.8 | 6.0 | 9.4 |
Protein synthesis | 4.2 | 9.6 | 4.7 |
Protein fate (folding, modification, destination) | 12.7 | 14.7 | 10.9 |
Protein with binding function or cofactor requirement | 26.7 | 32.3 | 24.7 |
Regulation of metabolism and protein function | 0.6 | 2.9 | 2.1 |
Cellular transport, transport facilitation and transport routes | 20.0 | 13.7 | 8.5 |
Cellular communication/Signal transduction mechanism | 2.4 | 3.5 | 4.5 |
Cell rescue, defense and virulence | 12.7 | 10.5 | 5.0 |
Interaction with the environment | 14.5 | 10.5 | 5.8 |
Systemic interaction with the environment | 6.1 | 3.3 | 2.7 |
Transposable elements, viral and plasmid proteins | 0.0 | 0.1 | 0.3 |
Cell fate | 1.8 | 1.9 | 1.6 |
Development (systemic) | 3.0 | 3.8 | 3.7 |
Biogenesis of cellular components | 2.4 | 4.5 | 5.5 |
Cell type differentiation | 1.2 | 0.9 | 0.8 |
Tissue differentiation | 0.6 | 0.9 | 0.3 |
Organ differentiation | 1.2 | 1.0 | 0.9 |
Subcellular localization | 46.7 | 50.5 | 46.6 |
Cell type localization | 0.6 | 0.1 | 0.5 |
Tissue localization | 0.6 | 0.3 | 0.1 |
Organ localization | 1.2 | 0.1 | 0.1 |
Unclassified proteins | 18.8 | 16.0 | 28.1 |