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Table 2 Major properties of the most abundant ESTs in RindPdigS

From: A transcriptomic approach highlights induction of secondary metabolism in citrus fruit in response to Penicillium digitatuminfection

Cluster

Best BlastX match

Accession No.

E-value

No ESTs (RindPdigS)

No ESTs (RindPdig24)

Log2(E/A)

Log2(W/A)

Log2(I/A)

Transcriptional profilea

P-02

No blast match

-

-

11

0

-0.07 ± 0.28

-0.26 ± 0.53

1.51 ± 1.41

I > EWA

P-03

FAD-binding domain containing protein [Arabidopsis thaliana]

NP_181025.1

1.E-08

11

0

0.52 ± 0.27

0.59 ± 0.60

3.11 ± 0.42

I>EW > A

P-01

DAHP synthase [Vitis vinifera]

AAN77866.1

3E-26

10

2

0.99 ± 0.24

1.65 ± 0.34

2.62 ± 0.32

I>W>E > A

P-07

ACC oxidase [Citrus sinensis]

AAG49361.1

5E-36

9

4

*

*

*

I>EW > A

P-10

Embryo-abundant protein-related [Arabidopsis thaliana]

NP_181669.1

3E-25

7

0

1.85 ± 0.26

**

2.41 ± 0.40

I>E > WA

P-09

Ribosomal L18ae protein family [Aspergillus nidulans]

EAA66532.1

9E-32

6

0

-0.15 ± 0.13

**

0.93 ± 0.80

I > EWA

P-04

Cystinosin homolog [Arabidopsis thaliana]

P57758

5E-35

5

0

1.46 ± 0.13

-0.17 ± 0.22

-0.05 ± 0.28

E > IWA

P-05

No blast match

-

-

5

0

0.17 ± 0.24

-0.01 ± 0.25

0.49 ± 0.79

I > EWA

P-11

homogentisic acid geranylgeranyl transferase [Triticum aestivum]

AAP43912.1

8E-12

5

3

0.85 ± 0.80

0.82 ± 0.46

1.90 ± 0.31

I>EW > A

P-06

ABC transporter family protein [Arabidopsis thaliana]

NP_181179.2

1E-19

4

0

-0.36 ± 0.17

0.01 ± 0.06

1.28 ± 0.20

I > EWA

P-08

ACC oxidase [Citrus sinensis]

AAG49361.1

2E-60

4

4

*

*

*

I>EW > A

P-14

Cyclase family protein [Arabidopsis thaliana]

NP_567957.1

2E-37

4

0

0.80 ± 0.31

-0.38 ± 0.35

-0.67 ± 0.24

E > IWA

P-15

40 S ribosomal protein S5 [Aspergillus nidulans]

XP_658447.1

3E-30

4

2

*

*

*

I > EWA

P-46

Dicyanin [Lycopersicon esculentum]

AAF66242.1

3E-33

4

0

0.05 ± 0.01

1.77 ± 0.59

2.66 ± 0.37

I>W > EA

P-53

No blast match

-

-

4

4

-0.05 ± 0.12

-1.38 ± 0.19

-1.41 ± 0.10

EA > IW

P-62

Caffeine synthase [Theobroma cacao]

BAE79730.1

2E-20

4

0

*

*

*

I

  1. aRelative expression level after treatment with air (A), ethylene (E), wounding (W) or P. digitatum infection (I) as determined by macroarray hybridazation.
  2. *No expression was detected in control tissue.
  3. **No expression was detected in wounded tissue.
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BMC Plant Biology

ISSN: 1471-2229

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