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Table 1 Distribution of sequence data types in RoBuST

From: RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae

Sequence Data Type

Alliaceae

Apiaceae

Structural genes

931

2732

mRNA/CDS

372

2082

Promoters

1

25

Transposons

6

56

EST

20201

2522

tRNA

99

384

rRNA

770

2252

5'UTR

23

28

Enhancer

-

10

TATA signal

1

26

CAAT signal

-

12

-10 signal

-

1

-35 signal

-

1

PolyA signal

33

37

PolyA site

14

60

Protein bind

-

2

3'UTR

35

26

Repeat region

108

573

Signal peptide

26

13

Replication origin

-

1

Misc feature

1250

1426

Precursor RNA

-

6

Prim transcript

1

10

Mature peptide

28

22

Primer bind

62

5

Misc signal

-

2

Stem loop

-

1

Variation

-

15

Misc RNA

262

4818

Transit peptide

-

5

Mitochondrail genes

15

60

Plastid genes

328

2006

  1. Numbers of entries for major categories of Alliaceae and Apiaceae sequences are indicated.