Table 2 Enrichment of putative bZIP-target cis-elements in promoters of chilling upregulated genes.
Cluster | Motif | Putative elementa | Associated class of bZIP (putative)b | % (TIC)c | e-value |
|---|---|---|---|---|---|
C100A | GGTTTGTA | as1/ocs/TGA-like | Groups D, I, S | 71 (10.56) | 5e-004 |
| Â | GAGGAAGA | as1/ocs/TGA-like | Groups D, I, S | 69 (13.28) | 4e-004 |
| Â | AAACAATG | as1/ocs/TGA-like | Groups D, I, S | 61 (12.36) | 9e-005 |
| Â | GCAATATA | as1/ocs/TGA-like* | Groups D, I, S | 58 (11.64) | 8e-004 |
C99 | AAATTGATT | as1/ocs/TGA-like | Groups D, I, S | 50 (14.12) | 3e-004 |
C99A | TTTTGCTG | as1/ocs/TGA-like | Groups D, I, S | 71 (11.97) | 7e-004 |
| Â | TTGGAGAG | RSG element | bZIP | 66 (11.78) | 3e-004 |
| Â | CCGTGACA | as1/ocs/TGA-like* | Groups D, I, S | 55 (11.52) | 6e-004 |
| Â | TTTGTGTA | as1/ocs/TGA-like* | Groups D, I, S | 51 (12.85) | 7e-004 |
C97 | ATGTTT(g/t)(a/g)(a/c) | as1/ocs/TGA-like* | Groups D, I, S | 62 (12.32) | 3e-004 |
| Â | GCG(a/c/t)ACAA | ABRE-like | Group-A | 62 (11.44) | 7e-004 |
| Â | ATATTTTGA | as1/ocs/TGA-like* | Groups D, I, S | 54 (13.95) | 4e-004 |
| Â | AGATTAAA | as1/ocs/TGA-like* | Groups D, I, S | 52 (12.40) | 1e-003 |
| Â | AATT(a/t)GAG | as1/ocs/TGA-like* | Groups D, I, S | 50 (13.45) | 8e-004 |
C97A | CGGCGGCGA | ABRE-like | Group-A | 52 (14.65) | 9e-004 |
C94 | CGACGACG | as1/ocs/TGA-like | Groups D, I, S | 61 (11.77) | 1e-004 |
| Â | GTTTTGAT | as1/ocs/TGA-like | Groups D, I, S | 58 (12.33) | 8e-004 |
| Â | GTGATGTG | as1/ocs/TGA-like | Groups D, I, S | 53 (12.23) | 5e-005 |
| Â | G3TGAC(a/g)A | as1/ocs/TGA-like | Groups D, I, S | 52 (11.99) | 5e-004 |
C91 | CTCCTCCT | ABRE-like | Group-A | 58 (14.14) | 9e-004 |
| Â | CGCCGTTC | Vs1-like | Groups D, I, S | 53 (11.37) | 2e-004 |
| Â | AGATGATG | as1/ocs/TGA-like | Groups D, I, S | 50 (12.98) | 1e-004 |
| Â | AATTTATG | as1/ocs/TGA-like | Groups D, I, S | 50 (12.90) | 2e-004 |
C90A | AATTTGAT | as1/ocs/TGA-like* | Groups D, I, S | 56 (12.80) | 1e-004 |
| Â | CGTGGTGT | ABRE-like | Groups D, I, S | 51 (11.80) | 5e-005 |
C88A | GGCGGGAG | ABRE-like | Groups D, I, S | 53 (12.47) | 8e-004 |
| Â | GGCGGGAG | ABRE-like | Groups D, I, S | 53 (12.47) | 8e-004 |
| Â | TCTTCTCTCT | CAMTA3 | bZIP | 50 (14.80) | 5e-004 |
| Â | GAAAATGA | as1/ocs/TGA-like | Groups D, I, S | 50 (12.74) | 4e-004 |
C86 | AAACCACA | ABRE-like | Groups D, I, S | 69 (11.25) | 2e-004 |
| Â | CAAAAACA | ABRE-like | Groups D, I, S | 68 (12.03) | 2e-004 |
| Â | GGCCATCG | as1/ocs/TGA-like | Groups D, I, S | 68 (11.35) | 2e-004 |
| Â | AGCGAGAG | ABRE-like | Group-A | 61 (11.84) | 5e-004 |
| Â | TACACCAT | ABRE-like | Group-A | 60 (11.47) | 2e-004 |
| Â | GAACGATG | ABRE-like | Group-A | 57 (11.22) | 2e-004 |
| Â | TCCTCTTCT | CAMTA3/ABRE-like | Groups D, I, S | 51 (13.37) | 9e-004 |
| Â | TATATGTA | ABRE-like | Group-A | 51 (13.35) | 2e-003 |
| Â | CAAATTGA | as1/ocs/TGA-like* | Groups D, I, S | 50 (12.54) | 5e-004 |
C87A | GCGAGGAA | ABRE-like | Group-A | 63 (11.21) | 2e-004 |
| Â | AGCAAACAA | ABRE-like | Group-A | 51 (13.37) | 2e-004 |
| Â | ACAACGAC | ABRE-like | Group-A | 50 (11.91) | 2e-004 |
C86A | CGGTGGCG | ABRE-like | Group-A | 70 (12.13) | 4e-004 |
| Â | TGAAGATG | as1/ocs/TGA-like | Groups D, I, S | 53 (12.24) | 1e-003 |
| Â | GCTGATTT | as1/ocs/TGA-like | Groups D, I, S | 51 (11.92) | 5e-004 |
C83 | CTCGCCGC | ABRE-like | Group-A | 65 (13.24) | 7e-004 |
| Â | AAATTTGA | as1/ocs/TGA-like* | Groups D, I, S | 63 (12.68) | 6e-004 |
| Â | C(c/t)GAGCTC | as1/ocs/TGA-like | Groups D, I, S | 57 (11.44) | 5e-004 |
C83A | AATTTGAT | as1/ocs/TGA-like* | Groups D, I, S | 70 (12.72) | 2e-004 |
| Â | GGCTC(a/g)A(a/c/g) | as1/ocs/TGA-like* | Groups D, I, S | 65 (11.06) | 6e-004 |
| Â | AATTTTGA | as1/ocs/TGA-like* | Groups D, I, S | 61 (12.86) | 7e-004 |
| Â | (a/t)GAAATTG | as1/ocs/TGA-like* | Groups D, I, S | 53 (11.85) | 4e-004 |
| Â | TCGCCGTC | ABRE-like | Group-A | 51 (13.06) | 2e-004 |
| Â | TCTGA(a/t)CA | as1/ocs/TGA-like* | Groups D, I, S | 51 (11.80) | 7e-004 |
| Â | GAG(a/g)CGAA | as1/ocs/TGA-like* | Groups D, I, S | 51 (13.00) | 1e-004 |
| Â | CCACCCAA | ABRE-like | Group-A | 51 (12.44) | 7e-004 |
C81 | AGGAGA(a/g)G | as1/ocs/TGA-like | Groups D, I, S | 61 (13.03) | 1e-004 |
| Â | GGCCGTG(c/g) | ABRE-like | Group-A | 52 (12.65) | 2e-004 |
C79 | CGTGGTGT | ABRE-like | Group-A | 65 (11.60) | 5e-004 |
| Â | GAAAATGA | as1/ocs/TGA-like | Groups D, I, S | 53 (12.04) | 2e-004 |
| Â | ATAATTTGA | as1/ocs/TGA-like | Groups D, I, S | 53 (13.74) | 9e-004 |
| Â | ATGTACATTT | as1/ocs/TGA-like | Groups D, I, S | 52 (12.82 | 2e-004 |
| Â | ATCATGCA | ABRE-like | Group-A | 51 (12.69) | 4e-004 |
C78 | CTCCTCCT | ABRE-like | Group-A | 65 (14.12) | 1e-003 |
| Â | AAATTGATT | as1/ocs/TGA-like* | Groups D, I, S | 53 (14.12) | 3e-004 |