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Table 1 Summary of cotton aquaporin genes

From: Identification of the family of aquaporin genes and their expression in upland cotton (Gossypium hirsutumL.)

Name

Accession Numberaor PUT ID†

Length (amino acid)

Highest similarity (%)b

Identification

Reference

   

Cotton

Other plants

Methodc

Number of cloned

 

PIPs

       

   PIP1;1

ABK60194

289

PIP1;14(100)

ACL14797(94)e

1, 2, 4

8/4

Li et al., 2009

   PIP1;2

ABR68794

287

PIP1;13(97)

EEF51202(96)f

1, 4

1/1

Liu et al., 2008

   PIP1;3

ABD63904

287

PIP1;15(99)

EEF51202(96)f

1, 3

1/1

 

   PIP1;4

BK007045

287

PIP1;15(99)

EEF51202(95)f

2, 3

1/1

 

   PIP1;5

BK007046

278

PIP1;12(95)

EEF51202(96)f

3

  

   PIP1;6

BK007047

287

PIP1;1(87)

EEF05326(95)e

3

  

   PIP1;7

BK007048

288

PIP1;10 (98)

ACL14797(94)e

3

  

   PIP1;8

BK007049

259

PIP1;9(92)

ABK95101(92)e

3

  

   PIP1;9

BK007050

257

PIP1;8(92)

ACL14797(92)e

3

  

   PIP1;10‡

GU998827

177

PIP1;7(98)

ACF39902(95)g

1

1/1

 

   PIP1;11

GU998828

289

PIP1;14(99)

ACL14797(94)e

1, 2

9/4

 

   PIP1;12‡

GU998829

267

PIP1;4(98)

EEF51202(95)f

1

4/3

 

   PIP1;13‡

GU998830

266

PIP1;3(100)

EEF51202(96)h

1

1/1

 

   PIP1;14

PUT41616

289

PIP1;1 (100)

ACL14797(94)e

3

  

   PIP1;15

PUT20977

287

PIP1;3(99)

EEF51202(96)f

3

  

   PIP2;1

ABK60195

285

PIP2;3(94)

EEF42954(93)f

4

 

Li et al., 2009

   PIP2;2

ABK60196

286

PIP2;12(100)

EEF42953(93)f

4

 

Li et al., 2009

   PIP2;3

PUT368101081

285

PIP2;13(99)

ABK96511(93)e

1, 3

1/1

 

   PIP2;4

BK007051

270

PIP2;11(100)

ABN14351(92)h

2, 3

1/1

 

   PIP2;5

PUT818101073

278

PIP2;7(100)

ABN14351(96)h

3

  

   PIP2;6

PUT818101073

278

PIP2;5(99)

ABN14351(96)h

1, 2, 3

8/5

 

   PIP2;7

PUT58401

261

PIP2;5(100)

ABN14351(96)h

3

  

   PIP2;8

PUT472101080

280

PIP2;4(83)

AtPIP2;7(89)i

3

  

   PIP2;9

ACB42441

278

PIP2;11(99)

ABK95359(94)e

1, 2, 3

6/4

 

   PIP2;10

BK007052

271

PIP2;13(80)

EEF32087(87)f

3

  

   PIP2;11

ACB42440

278

PIP2;4(100)

ABN14351(95)h

3

  

   PIP2;12

PUT51785

286

PIP2;2(100)

EEF42953(93)f

3

  

   PIP2;13

PUT368101081

285

PIP2;3(99)

EEF42953(94)f

3

  

TIPs

       

   TIP1;1

ACP28878

251

TIP1;3(100)

ACI95283(95)j

2, 3, 4

1/1

Li et al., 2009

   TIP1;2

ABR68795

252

TIP1;7(98)

EEF31283(95)f

1, 4

6/1

Liu et al., 2008

   TIP1;3

BK007053

251

TIP1;1(100)

ACI95283(95)j

2, 3

2/1

 

   TIP1;4

BK007054

251

TIP1;6(99)

ACI95283(93)j

1, 3

6/4

 

   TIP1;5

BK007055

249

TIP1;14(99)

ACI95283(92)j

3

  

   TIP1;6‡

BK007056

284

TIP1;4(98)

ACI95283(93)j

1, 3

4/2

 

   TIP1;7

GU998831

252

TIP1;2(98)

EEF31283(95)f

1, 3

6/2

 

   TIP1;8

BK007057

251

TIP1;1(99)

ACI95283(94)j

3

  

   TIP1;9‡

GU998832

179

TIP1;13(98)

EEF31283(95)f

1

1/1

 

   TIP1;10‡

GU998833

179

TIP1;13(98)

EEF31283(96)f

1

1/1

 

   TIP1;11‡

GU998834

179

TIP1;10(93)

EEF31283(96)f

1

2/2

 

   TIP1;12‡

GU998835

179

TIP1;7 (98)

AAW02943(95)h

1

1/1

 

   TIP1;13‡

GU998836

179

TIP1;2(99)

AAW02943(96)h

1

1/1

 

   TIP1;14

PUT83401

249

TIP1;5(99)

ACI95283(92)j

1, 2, 3

10/5

 

   TIP2;1

AAB04557

248

TIP2;3(99)

EEF46419(94)f

1, 3, 4

1/1

Ferguson et al., 1997

   TIP2;2‡

BK007058

245

TIP2;5(99)

EEF46419(93)f

2, 3

1/1

 

   TIP2;3

GU998837

248

TIP2;1(99)

EEF46419(94)f

1, 2, 3

4/3

 

   TIP2;4‡

GU998838

146

TIP2;5(94)

EEE83038(94)e

2

1/1

 

   TIP2;5‡

GU998839

146

TIP2;4(94)

EEE83038(94)e

1

1/1

 

   TIP2;6

PUT96185

250

TIP2;7(99)

CAO23095(96)h

3

  

   TIP2;7

PUT96185

250

TIP2;6(99)

CAO23095(95)h

3

  

   TIP4;1

BK007059

246

TIP4;2(100)

EEE93071(92)e

1, 3

3/1

 

   TIP4;2

BK007060

246

TIP4;1(100)

EEE93071(92)e

3

  

NIPs

       

   NIP1;1

BK007061

280

NIP1;3(98)

EEF40132(88)f

1, 2, 3

5/3

 

   NIP1;2‡

GU998840

170

NIP1;3(99)

AAS48064(92)k

1, 2

4/3

 

   NIP1;3‡

GU998841

174

NIP1;2(99)

AAS48064(93)k

1

1/1

 

   NIP2;1

PUT77848

259

NIP1;2(50)

EEF27965(86)f

3

  

   NIP5;1‡

PUT43349

256

NIP5;2(97)

EEF43506(94)f

3

  

   NIP5;2‡

PUT43348

221

NIP5;1(97)

EEF43506(94)f

3

  

   NIP6;1‡

BK007062

280

NIP6;6(100)

EEE82602(92)e

1, 2, 3

10/5

 

   NIP6;2‡

PUT83990

288

NIP6;5(99)

EEF35060(90)f

2, 3

1/1

 

   NIP6;3‡

GU998842

140

NIP6;4(98)

EEE79702(92)e

2

1/1

 

   NIP6;4‡

GU998843

140

NIP6;3(98)

EEE79702(92)e

2

1/1

 

   NIP6;5‡

GU998844

203

NIP6;6(99)

EEE79702(94)e

2

1/1

 

   NIP6;6‡

GU998845

234

NIP6;1(100)

EEE79702(93)e

1

1/1

 

SIPs

       

   SIP1;1

PUT7068

240

SIP1;2(73)

ABD46741(77)h

3

  

   SIP1;2

BK007063

247

SIP1;3(73)

EEE99776(84)e

3

  

   SIP1;3

BK007064

241

SIP1;5(98)

EEE37542(75)f

1, 3

1/1

 

   SIP1;4

PUT22448

243

SIP1;7(98)

ACU20408(71)l

1, 3

1/1

 

   SIP1;5‡

GU998846

198

SIP1;3(98)

EEE37542(71)f

1

1/1

 

   SIP1;6‡

GU998847

198

SIP1;5(92)

EEE37542(71)f

2

1/1

 

   SIP1;7‡

GU998848

198

SIP1;4(97)

ACU24419(74)l

1

5/3

 

XIP

       

   XIP1;1

GU998849

302

 

EEE86940(86)e

1, 3

9/3

 
  1. †: GenBank accessions from GU998827-GU998849 are submitted in this study. Also, nucleotide sequence data reported are available in the Third Party Annotation Section of the DDBJ/EMBL/GenBank databases under the accession numbers TPA: BK007045-BK007064. PlantGDB-assembled Unique Transcript (PUT) ID numbers are provided as sources of indicated genes.
  2. ‡: Partial sequence.
  3. a: Accession number from NCBI.
  4. b: A gene that shows highest identity in cotton by ClustalW or highest similarity in other plants by BLASTP. Parenthesis indicates percentage of identity at amino acid level.
  5. c: 1; Amplification of cDNA, 2; Amplification of genomic DNA, 3; EST BLAST, 4; Published literature
  6. d: Number of clones isolated/Number of independent experiments.
  7. e: Populus, f: Common bean, g: Camellia, h: Grape, i: Arabidopsis, j: Sinapis, k: Medicago, l: Soybean.