Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadenseRIL population

Lacape, Jean-Marc; Llewellyn, Danny; Jacobs, John; Arioli, Tony; Becker, David; Calhoun, Steve; Al-Ghazi, Yves; Liu, Shiming; Palaï, Oumarou; Georges, Sophie; Giband, Marc; de Assunção, Henrique; Barroso, Paulo AugustoVianna; Claverie, Michel; Gawryziak, Gérard; Jean, Janine; Vialle, Michèle; Viot, Christopher

doi:10.1186/1471-2229-10-132

Table 2 Phenotypic variation of fiber traits

From: Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadenseRIL population

Fiber trait category	Fiber trait acronym (unit)	Experimental site	Gua	VH8	No. RILs	RIL mean	RIL sd	RIL max	RIL min
Fineness	fineness, H (mtex)	Br7	168.3	109.8	120	148.5	25.0	213.0	81.0
		Br8	161.6	105.8	125	147.9	26.3	216.5	60.0
		Cs7	169.0	140.0	99	155.6	22.0	202.0	110.0
		Cs8	144.5	90.5	65	140.4	20.1	181.1	92.9
		Cs9	155.2	94.3	66	153.7	20.8	192.2	99.6
		Ga7	168.5	62.0	79	132.3	24.6	173.0	61.0
		Lu7	154.0	125.0	68	149.1	16.1	171.0	104.5
		Lu8	168.0	117.5	90	154.7	19.5	183.0	103.0
		Mp8	179.0	123.5	65	157.8	24.2	202.0	87.0
		Mean all expts	163.1	107.6		148.9
	Standard Fineness, Hs	Br7	165.0	175.0	120	165.6	30.7	271.0	102.5
	(mtex)	Br8	162.6	178.6	125	161.7	31.5	280.0	96.5
		Cs7	179.0	146.0	99	164.3	16.8	200.0	133.0
		Cs9	158.4	124.5	66	162.5	18.0	198.1	127.1
		Ga7	231.0	114.0	79	210.2	40.6	308.0	109.0
		Lu7	177.0	146.0	68	170.8	13.4	194.3	136.6
		Mp8	259.3	182.3	65	208.0	42.4	379.0	134.0
		Mean all expts	190.3	152.3		177.6
	Micronaire, IM	Br7	4.43	2.26	120	3.72	0.87	5.45	1.43
		Br8	4.21	2.11	125	3.77	0.87	5.53	1.37
		Cs8	3.69	2.35	65	3.40	0.66	4.59	2.24
		Cs9	4.30	2.80	66	4.21	0.54	5.06	2.89
		Ga7	3.78	1.89	96	2.95	0.62	4.67	1.85
		Ge6	4.53	2.45	24	3.86	0.69	5.00	2.50
		Lu7	4.11	2.68	63	3.71	0.67	4.55	2.10
		Lu8	3.80	2.10	70	3.85	0.60	4.80	2.30
		Mp7	4.05	NA	96	3.67	0.76	5.46	1.90
		Mp8	3.60	2.62	65	3.45	0.72	4.77	1.52
		Mean all expts	4.1	2.4		3.7
	Maturity Ratio, MR	Br7	1.02	0.63	120	0.92	0.18	1.23	0.42
		Br8	1.00	0.59	125	0.95	0.18	1.25	0.39
		Cs7	0.94	0.96	99	0.94	0.06	1.05	0.79
		Cs8	0.91	0.61	65	0.83	0.12	1.03	0.49
		Cs9	0.98	0.76	66	0.95	0.05	1.03	0.78
		Ga7	0.74	0.54	79	0.65	0.15	0.98	0.39
		Lu7	0.87	0.86	68	0.87	0.05	0.94	0.75
		Lu8	0.90	0.80	90	0.88	0.06	0.96	0.71
		Mp7	0.86	NA	96	0.86	0.04	0.96	0.75
		Mp8	0.71	0.68	65	0.78	0.15	1.08	0.39
Fineness	Maturity Ratio, MR	Mean all expts	0.89	0.72		0.86
Length	Mean Length, ML	Br7	24.28	35.86	123	25.89	2.58	31.79	18.70
	(mm)	Br8	25.29	35.35	126	26.15	2.52	31.66	18.43
		Cs8	26.15	29.75	65	25.42	2.13	30.69	19.91
		Ga7	24.06	30.50	83	24.24	2.52	29.39	16.99
		Ge6	26.20	32.80	38	26.07	2.43	30.95	17.62
		Lu7	24.20	32.30	63	24.95	2.41	28.65	18.03
		Mp7	24.00	NA	96	26.53	2.44	32.81	19.69
		Mp8	25.88	36.10	67	25.91	2.37	30.96	20.85
		Mean all expts	25.0	33.2		25.6
	Length, UHML (mm)	Br7	28.89	40.79	123	30.71	2.73	37.55	22.85
		Br8	29.76	40.46	126	30.93	2.65	37.45	23.35
		Cs7	32.60	48.80	99	32.57	2.99	41.15	24.38
		Cs8	30.52	35.84	65	30.33	2.02	35.77	25.58
		Cs9	29.88	37.67	66	31.34	1.78	35.87	28.17
		Ga7	28.65	37.60	83	29.19	2.70	35.50	22.80
		Ge6	30.80	38.20	38	30.99	2.02	36.32	26.92
		Lu7	29.30	39.00	63	30.40	2.32	35.31	24.89
		Lu8	30.00	38.74	70	31.35	1.98	37.08	27.43
		Mp7	28.70	NA	96	31.62	2.49	37.84	25.54
		Mp8	30.43	40.55	67	30.83	2.40	36.30	25.30
		Mean all expts	30.0	39.8		30.9
Length uniformity	Uniformity Index, UI	Br7	84.00	87.91	123	84.28	2.34	88.00	76.05
		Br8	84.98	87.36	126	84.50	2.50	88.25	75.30
		Cs8	85.60	83.00	65	83.74	2.46	88.04	76.04
		Cs9	83.40	85.00	66	83.74	1.46	86.42	79.45
		Ga7	83.95	81.10	83	83.03	2.44	87.50	72.90
		Lu8	83.20	85.10	70	85.71	1.60	88.10	81.00
		Mp8	85.00	89.00	67	83.94	2.15	88.40	78.50
		Mean all expts	84.3	85.5		84.1
Strength	Strength (g/tex)	Br7	29.64	47.10	123	32.02	4.26	42.45	20.95
		Br8	30.69	49.39	126	32.59	4.62	46.35	21.00
		Cs8	31.16	35.81	65	32.67	2.64	39.23	26.44
		Cs9	31.30	41.60	66	33.26	3.06	41.78	27.14
		Ga7	29.05	39.30	83	30.76	4.19	44.80	20.40
		Ge6	34.10	41.00	38	33.65	3.57	40.20	25.80
		Lu7	30.30	40.50	63	29.71	4.44	37.70	18.40
		Lu8	25.00	31.90	70	28.21	2.76	38.30	23.20
		Mp7	28.80	NA	96	31.85	3.95	43.10	21.40
		Mp8	29.80	46.30	67	31.68	3.01	40.30	22.50
		Mean all expts	30.0	41.4		31.6
Elongation	Elongation	Br7	5.1	4.7	123	5.2	0.5	6.8	3.5
		Br8	5.0	4.8	126	5.1	0.5	6.4	3.7
		Cs8	4.6	3.3	65	4.3	0.4	5.2	3.6
		Cs9	3.7	NA	66	3.4	0.9	5.6	1.5
		Ga7	4.9	4.3	83	4.9	0.5	6.1	3.7
		Lu8	5.2	3.6	70	6.3	1.5	10.1	2.8
		Mp8	5.5	4.9	67	5.5	0.6	6.4	4.0
		Mean all expts	4.9	4.3		5.0
Color	Reflectance, Rd	Br7	78.8	81.3	123	77.3	4.1	84.6	64.5
		Br8	82.3	80.1	126	78.7	4.1	85.6	67.1
		Ga7	75.6	75.0	84	74.4	3.4	80.2	63.1
		Ge6	82.4	78.6	38	77.4	3.6	84.0	71.1
		Lu7	74.9	82.1	63	76.6	2.9	83.5	67.3
		Mp7	77.7	NA	96	77.0	5.1	84.1	59.2
		Mp8	77.8	81.2	66	78.1	3.9	84.1	63.5
		Mean all expts	78.5	79.7		77.1
	Yellowness, b	Br7	8.6	8.9	123	9.2	1.4	13.2	6.4
		Br8	8.7	8.2	126	8.8	1.3	12.1	6.1
		Ga7	10.6	10.3	84	10.6	1.3	15.2	8.6
		Ge6	8.0	8.7	38	8.4	1.2	10.8	6.3
		Lu7	7.9	8.7	63	8.8	1.2	12.2	7.0
		Mp7	9.6	NA	96	9.3	1.3	13.9	6.9
		Mp8	9.0	8.7	66	9.4	1.2	14.0	7.6
		Mean all expts	8.9	8.9		9.2

Phenotypic variation of fiber traits measured on the 2 parents and the RILs from 11 experiments: mean trait value of parents Guazuncho-2 (GUA) (Gh) and VH8-4602 (VH8)(Gb), number of RILs analyzed, and mean, standard deviation and maximum and minimum values for the RILs for each trait

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