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Table 4 Summary of expression ratio of 33 ESTs from highly regulated Ra-induced genes over BL at different fluences at indicated time points versus dark-grown seedlings

From: Comparative transcriptional profiling-based identification of raphanusanin-inducible genes

Familya

Function

5 min

15 min

30 min

  

Continuous1

Continuous2

pulse

Continuous1

Continuous2

pulse

Continuous1

Continuous2

pulse

Ubi-3

1

2.8 ± 0.6

1.34 ± 0.2

2.5 ± 0.5

6 ± 0.7*

2.7 ± 0.2*

2.8 ± 0.4*

4.3 ± 0.6*

1.8 ± 0.5

2.3 ± 0.3

CSN3

1

1.5 ± 0.1

1.23 ± 0.1

3.8 ± 0.5*

2.9 ± 0.3*

1.97 ± 0.2*

1.13 ± 0.1

2.02 ± 0.2*

1.3 ± 0.1

0.98 ± 0.1

Zinc Finger

1

1.3 ± 0.2

0.9 ± 0.2

2.6 ± 0.3*

2.68 ± 0.6

1.5 ± 0.6

1.23 ± 0.2

1.95 ± 0.4

2.2 ± 0.3

0.93 ± 0.3

PMF1

1

1.5 ± 0.2

3.2 ± 0.5

2.14 ± 0.4

2 ± 0.2

2.8 ± 0.3*

1.2 ± 0.2

2.5 ± 0.2*

3.8 ± 1

1.12 ± 0.1

CND41

1

0.8 ± 0.2

0.78 ± 0.1

1.04 ± 0.1

0.62 ± 0.1

0.25 ± 0.2

1.96 ± 0.2*

1.53 ± 0.3

1.25 ± 0.2

1.81 ± 0.3

CUL1

1

1.19 ± 0.1

1.65 ± 0.1

4.1 ± 0.7*

1.56 ± 0.2

1.85 ± 0.1*

1.49 ± 0.1

2.7 ± 0.2*

2.8 ± 0.6

0.89 ± 0.2

NTRA

2

2.7 ± 0.4

1.8 ± 0.5

2.3 ± 0.3

3.2 ± 0.6

2.98 ± 0.6

2.15 ± 0.4

1.3 ± 0.1

1.14 ± 0.2

0.92 ± 0.1

ERECTA

2

5.3 ± 0.6*

16.5 ± 2.3*

1.8 ± 0.2

9.16 ± 1.7*

5.5 ± 1.5

2.2 ± 0.3

3.23 ± 0.3*

3.85 ± 0.8

1.9 ± 0.2

CAT

2

1.37 ± 0.2

0.89 ± 0.1

0.7 ± 0.1

0.42 ± 0.1*

0.22 ± 0.1*

0.58 ± 0.1

0.35 ± 0.1*

1 ± 0.2

2.2 ± 0.2*

MBP1

2

1.01 ± 0.1

0.88 ± 0.1

2.1 ± 0.3

2.76 ± 0.4*

1.86 ± 0.3

1.12 ± 0.1

4.32 ± 1

2.08 ± 0.5

1.3 ± 0.4

CIPKI

2

1.8 ± 0.3

0.89 ± 0.2

1.05 ± 0.1

2.39 ± 0.2*

1.34 ± 0.2

1.4 ± 0.2

2.98 ± 0.4*

2 ± 0.4

2.2 ± 0.6

CAMTA3

2

0.77 ± 0.1

1.21 ± 0.1

0.98 ± 0.1

1.98 ± 0.2*

1.8 ± 0.1*

2.63 ± 0.2*

1.03 ± 0.1

1.3 ± 0.1

1.2 ± 0.3

DRP

2

2.03 ± 0.4

4.9 ± 1.2

3.8 ± 0.6

2.2 ± 0.2*

3.8 ± 0.5*

2 ± 0.3

3.9 ± 0.9

5.98 ± 0.2*

1.79 ± 0.3

RMB2

2

1.22 ± 0.1

1.35 ± 0.3

0.91 ± 0.1

1.89 ± 0.3

1.81 ± 0.2

1.2 ± 0.1

1.43 ± 0.2

1.25 ± 0.1

1.01 ± 0.2

Glycoprotein

2

0.6 ± 0.1

0.56 ± 0.2

0.78 ± 0.1

1.73 ± 0.2

2.57 ± 0.4

0.75 ± 0.1

3.22 ± 0.5*

2 ± 0.8

2.4 ± 0.3*

ACCO

2

1.12 ± 0.2

1.09 ± 0.1

3.14 ± 0.3*

1.98 ± 0.2

1.83 ± 0.3

1.56 ± 0.3

3.15 ± 0.7

1.93 ± 0.5

0.91 ± 0.1

LRT

2

1.06 ± 0.1

1.12 ± 0.1

0.9 ± 0.1

0.95 ± 0.2

0.85 ± 0.2

0.8 ± 0.1

4.3 ± 1.9

2.97 ± 0.4*

9.5 ± 3

Kinesin

3

1.9 ± 0.5

1.45 ± 0.4

2.55 ± 0.8

3.2 ± 0.2*

2.65 ± 0.7

3.1 ± 1.1

4.33 ± 0.9

2.15 ± 0.2*

1.41 ± 0.3

CCR4-NOT

4

2.89 ± 0.3*

3.67 ± 0.2*

2.3 ± 0.2*

4.5 ± 1.2

1.88 ± 0.3

1.3 ± 0.1

6.1 ± 1.2*

1.98 ± 0.5

1.68 ± 0.2

PPFP

4

1.48 ± 0.1

6.8 ± 1.5

2 ± 0.2

1.8 ± 0.2

3 ± 0.4*

0.33 ± 0.1*

1.39 ± 0.2

2.67 ± 0.6

1.6 ± 0.5

PPEase

4

2.4 ± 0.3

1.2 ± 0.2

7.9 ± 1.3*

2.3 ± 0.2*

2.4 ± 0.4

4.5 ± 0.7*

3.3 ± 0.3*

2.8 ± 0.2*

1.25 ± 0.2

PTI1

4

2.8 ± 0.5

4 ± 0.6*

2.05 ± 0.6

2 ± 0.3

1.5 ± 0.5

0.98 ± 0.2

1.7 ± 0.1

1.1 ± 0.1

1.98 ± 0.3

KT

4

0.73 ± 0.1

1.35 ± 0.2

1.8 ± 0.2

1.65 ± 0.1

1.5 ± 0.6

0.38 ± 0.1*

1.55 ± 0.3

1.35 ± 0.2

0.82 ± 0.1

SDR

3

0.85 ± 0.2

0.7 ± 0.1

1.09 ± 0.1

2.64 ± 0.1*

1.8 ± 0.2

0.9 ± 0.1

1.09 ± 0.1

1.23 ± 0.1

0.85 ± 0.1

PKC

4

0.5 ± 0.3

0.25 ± 0.2*

1.4 ± 0.1

0.77 ± 0.1

0.18 ± 0.1*

0.78 ± 0.2

0.65 ± 0.1

0.83 ± 0.1

1.3 ± 0.1

Pescadillo

2

0.5 ± 0.1*

0.6 ± 0.2

0.8 ± 0.2

0.82 ± 0.1

0.23 ± 0.1*

3.37 ± 0.4*

1.25 ± 0.5

0.8 ± 0.1

2.35 ± 0.3

GTPase

2

0.94 ± 0.1

0.83 ± 0.1

2.6 ± 0.3*

1.13 ± 0.1

0.42 ± 0.2

3.55 ± 0.7

0.92 ± 0.1

0.47 ± 0.3

3.1 ± 0.3*

GH3

3

1.1 ± 0.1

1.17 ± 0.1

1.4 ± 0.3

1.34 ± 0.2

1.8 ± 0.3

2.1 ± 0.3

1.09 ± 0.1

1.12 ± 0.1

2.3 ± 0.5

PLC

4

0.98 ± 0.1

0.87 ± 0.2

1.32 ± 0.1

0.7 ± 0.1

1.12 ± 0.1

0.93 ± 0.1

1.1 ± 0.3

0.7 ± 0.1

2.89 ± 0.4*

PGβ1

4

0.98 ± 0.2

1.16 ± 0.1

1.55 ± 0.2

1.3 ± 0.1

1.85 ± 0.4

3.3 ± 0.5*

1.4 ± 0.1

1.55 ± 0.2

2.5 ± 0.5

Peroxidase

2

2.76 ± 0.3*

0.95 ± 0.1

2.5 ± 0.6

1.8 ± 0.4

2.5 ± 0.2*

1.2 ± 0.1

1.23 ± 0.1

1.05 ± 0.1

1.3 ± 0.3

USP

2

1.03 ± 0.2

0.9 ± 0.2

0.69 ± 0.1

1 ± 0.1

1.2 ± 0.1

0.5 ± 0.1*

1.08 ± 0.1

1.4 ± 0.3

2.9 ± 0.7

3KCS4-21

3

1.1 ± 0.1

0.95 ± 0.1

1.7 ± 0.2

1.18 ± 0.2

1.14 ± 0.1

1.23 ± 0.2

0.81 ± 0.1

0.9 ± 0.1

2.9 ± 0.4*

  1. a one representative clone for each gene is shown. Three independent biological replicates were performed. Value ± s.e. indicates expression ratio of Treatment/Control after normalization ± standard error of the mean (n = 3). Genes that differ significantly (student t test p-value less than 0.05) in their expression between the treatment and control are marked with an asterisk (*). Bold represents expression ratios (≥1.5 or ≤0.6). Underlined values show the opposite regulation on different fluences. The functional categories are 1: protein metabolism/binding, 2: defence, 3: metabolism, 4: Unclassified. Continuous 1: 0.45 μmol m-2 s-1; Continuous 2: 0.1 μmol m-2 s-1; Pulse: 30 μmol m-2 s-1 for 15 sec. The values shown represent fold change (treatment vs. control).
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BMC Plant Biology

ISSN: 1471-2229

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