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Table 2 Similarity of cDNA-AFLP sequences to a variety of datasets:

From: Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

Fragment ID Gene annotation Dataset Comparison
   A B C D E
   BLASTn BLASTx BLASTx BLASTx BLASTn
176.2-G41-48I putative disease resistance protein [Malus × domestica] 34 25 22 21 28
176.1-G41-48I unknown [Malus × domestica] 34 24 23 23 30
171-G41-48I Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53) 36 24 18 24 30
54.2-M.26R DNA topoisomerase II [Malus × domestica] 36 24 20 24 26
175-G41-48I putative WRKY transcription factor 30 [Vitis aestivalis] 38 26 23 24 32
131.4_G41_48_OE hypothetical protein pNG7269 [Haloarcula marismortui ATCC 43049] gb|AAV44969 38 20 20 23 28
37-G41-48R   40 20 18 22 28
136.2-G41-2I hypothetical protein 12.t00009 [Asparagus officinalis] 40 24 21 23 26
64.4-G41-48OE Fusarium resistance protein I2C-5-like [Oryza sativa (japonica cultivar-group)] 42 24 21 22 28
201.3-G41-48I putative leucine-rich repeat transmembrane protein kinase [Malus × domestica] 44 41 39 21 30
200.1-G41-48I Probable WRKY transcription factor 29 52 64 22 54 26
213-G41-48I Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65) 56 68 22 52 26
221-G41-48I Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65) 56 66 22 51 30
7.2_M.26_2 hypothetical protein RT0201 [Rickettsia typhi str. Wilmington] gb|AAU03684.1| cons 64 21 21 22 62
190-G41-48I Leucine-rich repeat [Medicago truncatula] 418 21 22 22 28
175.2_G41_48I beclin 1 protein [Malus × domestica] 541 22 23 30 30
81_G41_48I AT5 g56010/MDA7_5 [Arabidopsis thaliana] 841 22 23 30 769
176.3_G41_48I protein kinase [Malus × domestica] 280 22 25 30 26
171.1_G41_48I protein kinase [Malus × domestica] 107 23 24 35 28
4.3_M.26_2I MYB11 [Malus × domestica] 628 24 21 24 646
165_M.26_2R protein kinase [Malus × domestica] 168 24 44 51 28
201_M.26R LYTB-like protein [Malus × domestica] 692 24 24 24 26
98_G41_48 putative chalcone isomerase 4 [Glycine max] 1195 24 22 26 805
3.3_M.26_2I Os08 g0162600 [Oryza sativa (japonica cultivar-group)] 289 24 22 20 289
137.1_G41_48_I dbj|BAC57824.1| unknown 472 25 25 27 24
115_G41_2I chalcone synthase [Malus × domestica] 714 26 24 22 26
200_G41_48I soluble NSF attachment protein [Malus × domestica] 496 26 25 26 28
4.2_M.26_2I ATP binding/kinase/protein serine/threonine kinase [Arabidopsis thaliana 936 29 26 29 936
142_G41_48I flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase 654 37 22 34 293
166_M.26_2R protein kinase [Malus × domestica 414 44 49 20 26
1.2_M.26_2I putative hydroquinone glucosyltransferase; arbutin synthase [Malus × domestica] 444 62 23 60 32
112_G4148I aquaporin 2 [Bruguiera gymnorhiza] 793 116 166 21 34
201_G41_48I translation initiation factor eIF-4A [Malus × domestica] 309 121 24 21 30
137.2_G41_48I hypothetical protein [Citrus × paradisi] 507 141 23 21 498
205_G41_48I glyceraldehyde-3-phosphate dehydrogenase [Panax ginseng] 765 176 22 24 414
  1. ESTs expressed preferentially under fire blight challenge (A), A. thaliana compatibility ESTs (B); A. thaliana incompatibility ESTs (C), similar to A. thaliana Salicylic Acid Response ESTs (D), and Malus EST in tissue challenged by E. amylovora found by Norelli et al, (2009) by suppression subtractive hybridization (SSH) (E). Gene annotations were determined by most informative BLASTx comparision below a predetermined threshold of 1e-3. NA indicates BLASTn similarity score below (A) or above (B-E).