Table 4 The domestication and improvement of candidate genes in this study
| Â | Trait | Env | Gene | P-value | Elite haplotype | Positions of haplotype bases | Frequencies of elite haplotype (%) | Selection region | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Hap | Env | Wild | Landrace | Improved | Dom | Imp | ||||||
QTN | DWR | 2010 | Glyma06g04840 | 1.50E-03 | Â | AT; GC | 3,428,833; 3,428,837 | 0.00 | 25.53 | 20.59 | Â | Â |
DWR | 2014 | Glyma07g18150 | 2.99E-03 | Â | CA | 17,896,192; 17,896,207 | 100.00 | 68.18 | 56.73 | dom287 | imp150 | |
DWR | BLUP | Glyma07g18150 | 6.99E-06 | Â | CA | 17,896,192; 17,896,207 | 100.00 | 65.73 | 55.56 | dom287 | imp150 | |
FWR | 2010 | Glyma18g03090 | 1.56E-05 | Â | GTG; GTA; TGA | 2,036,717; 2,040,047; 2,040,057 | 85.71 | 76.43 | 59.26 | Â | imp463 | |
FWR | 2015 | Glyma07g18150 | 3.42E-04 | Â | CA | 17,896,192; 17,896,207 | 100.00 | 65.47 | 56.19 | dom287 | imp150 | |
FWR | BLUP | Glyma03g01603 | 7.61E-03 | Â | GAG | 1,383,737; 1,383,762; 1,395,406 | 22.22 | 0.00 | 0.00 | Â | imp43 | |
FWR | BLUP | Glyma07g18150 | 4.72E-06 | Â | CA | 17,896,192; 17,896,207 | 100.00 | 65.73 | 55.56 | dom287 | imp150 | |
LH | BLUP | Glyma19g40980 | 1.90E-03 | Â | G | 47,278,753 | 38.46 | 11.41 | 21.43 | dom909 | Â | |
DWR | Joint | Glyma09g32570 | 3.58E-02 | 5.99E-09 | C | 39,084,436 | 91.49 | 90.09 | 91.65 | Â | Â | |
FWR | Joint | Glyma03g01603 | 1.30E-04 | 4.54E-27 | GAG | 1,383,737; 1,383,762; 1,395,406 | 22.58 | 0.00 | 0.00 | Â | imp43 | |
FWR | Joint | Glyma07g18150 | 1.15E-07 | 1.33E-29 | CA | 17,896,192; 17,896,207 | 100.00 | 66.73 | 55.99 | dom287 | imp150 | |
LH | Joint | Glyma07g18150 | 1.06E-03 | 1.20E-02 | CA | 17,896,192; 17,896,207 | 100.00 | 66.48 | 55.99 | dom287 | imp150 | |
iQEI | DWR | Â | Glyma04g41701 | 1.68E-02 | 5.75E-07 | A | 47,556,222 | 48.48 | 17.61 | 27.72 | dom163 | Â |
FWR | Â | Glyma16g22630 | 6.81E-03 | 7.42E-30 | AT; GA | 26,127,917; 26,128,002 | 40.48 | 2.77 | 0.00 | Â | imp425 | |
LH | Â | Glyma13g33590 | 5.09E-03 | 5.31E-03 | AATGT | 35,390,245; 35,393,088; 35,393,093; 35,393,098; 35,393,100 | 9.30 | 0.00 | 0.89 | dom613 | imp338 | |
QEI | LH | 2015 | Glyma02g38910 | 9.48E-03 | 1.93E-167 | A | 44,246,582 | 75.00 | 27.87 | 22.33 | Â | imp39 |
LH | 2015 | Glyma16g27950 | 8.99E-04 | 6.40E-168 | A | 31,899,123 | 25.00 | 56.10 | 21.60 | Â | Â | |
LH | 2015 | Glyma18g43250 | 2.56E-02 | 2.55E-129 | AT | 52,686,280; 52,687,266 | 8.33 | 12.79 | 5.35 | Â | Â | |
LH | BLUP | Glyma12g03200 | 3.01E-09 | 5.88E-277 | C | 2,103,129 | 33.33 | 0.65 | 0.00 | Â | Â | |
LR | 2015 | Glyma16g08480 | 3.49E-02 | 3.11E-117 | A | 7,888,926 | 45.45 | 14.33 | 16.29 | Â | Â | |