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Table 2 SNVs and heterozygosity values in five C. australasica cultivars with respect to C. australasica cv 2 (Rainbow) as the reference

From: The genome of Citrus australasica reveals disease resistance and other species specific genes

Cultivar

 

Whole genome

 

CDS

 

Heterozygosity

 

Heterozygous SNVs

100% homozygous SNVs

Total SNVs

 

Heterozygous SNVs

100% homozygous SNVs

Total SNVs

 

C. australasica cv 2 (Rainbow)

 

1,601,626

37

1,601,663

 

104,730

1

104,731

 

0.47

C. australasica cv 1

 

1,192,418

1,037,382

2,229,800

 

81,382

68,639

150,021

 

0.35

C. australasica cv 4 (Red Finger lime)

 

1,407,305

1,053,367

2,460,672

 

95,624

66,596

162,220

 

0.41

C. australasica cv 3 (Red champagne)

 

1,927,999

842,733

2,770,732

 

130,940

50,892

181,832

 

0.56

C. australasica cv 5 (Ricks red)

 

1,860,975

794,928

2,655,903

 

127,859

49,745

177,604

 

0.54

  1. Reference genome size 344.2 Mb including nine pseudochromosomes and unplaced scaffolds