Table 1 Basic characteristics of C5-MTases in the cotton genome
gene name | Type | Locus ID | Location (chromosome) | Position (domain) | CDS (bp) | AA | PI | Predicted subcellular localization |
|---|---|---|---|---|---|---|---|---|
GaDMT1 | CMTc | Ga02G1310 | Chr02:91041776-91047696- | 442–816 | 2724 | 851 | 5.66 | Nucleus |
GaDMT2 | DRM | Ga04G1492 | Chr04:86372417-86376133- | 511–630 | 4638 | 640 | 4.88 | Chloroplast |
GaDMT3 | MET | Ga04G1657 | Chr04:90780693-90787721- | 1150–1579 | 1179 | 1585 | 5.51 | Nucleus |
GaDMT4 | CMTd | Ga07G0535 | Chr07:5708914–5,715,570 + | 499–871 | 2082 | 907 | 5.09 | Nucleus |
GaDMT5 | CMTa | Ga08G1800 | Chr08:111527760-111536767- | 589–729 | 2580 | 730 | 7.69 | Nucleus |
GaDMT6 | CMTb | Ga08G1801 | Chr08:111537181-111547908- | 769–1145 | 1914 | 1182 | 8.64 | Nucleus |
GaDMT7 | DNMT2 | Ga08G2785 | Chr08:127956353–127,959,973+ | 19–395 | 1992 | 398 | 6.41 | Cell membrane, Endoplasmic reticulum |
GaDMT8 | DRM | Ga09G0343 | Chr09:9182888–9,188,986+ | 569–687 | 1494 | 693 | 5.14 | Chloroplast |
GaDMT9 | CMTd | Ga13G0623 | Chr13:9274883-9284481- | 431–799 | 2421 | 835 | 5.35 | Cytoplasm |
GrDMT1 | CMTd | Gorai.001G052000 | Chr01 : 4,942,493–4,949,993 | 507–867 | 2718 | 905 | 4.84 | Nucleus |
GrDMT2 | CMTc | Gorai.002G216500 | Chr02 : 56,627,700–56,634,321 | 454 ~ 812 | 2556 | 851 | 5.93 | Nucleus |
GrDMT3 | CMTa | Gorai.004G180200 | Chr04 : 49,072,088–49,079,643 | 587–945 | 2952 | 983 | 7.4 | Nucleus |
GrDMT4 | CMTb | Gorai.004G180300 | Chr04 : 49,082,203–49,092,215 | 789–1145 | 3558 | 1185 | 8.22 | Nucleus |
GrDMT5 | DNMT2 | Gorai.004G274400 | Chr04 : 60,871,759–60,876,114 | 20–391 | 1221 | 406 | 6.05 | Nucleus |
GrDMT6 | DRM | Gorai.006G031000 | Chr06 : 8,112,196–8,117,039 | 513–627 | 1911 | 636 | 4.54 | Chloroplast |
GrDMT7 | DRM | Gorai.012G062900 | Chr12 : 8,876,628–8,881,084 | 526–640 | 1965 | 654 | 4.72 | Chloroplast |
GrDMT8 | MET | Gorai.012G048000 | Chr12 : 6,069,727–6,077,197 | 1144–1570 | 4734 | 1577 | 5.36 | Nucleus |
GhDMT1 | DRM | CotAD_37635 | At_chr06:11311066.11315214- | 512–630 | 1911 | 636 | 4.8 | Nucleus |
GhDMT2 | MET | CotAD_51709 | At_chr9:63179674.63185543- | 1076–1505 | 4536 | 1511 | 6.34 | Nucleus |
GhDMT3 | DRM | CotAD_46796 | At_chr9:65748738.65752451+ | 511–630 | 1923 | 640 | 4.85 | Chloroplast |
GhDMT4 | CMTd | CotAD_10542 | Dt_chr1:40856014.40859213- | 1-308 | 1035 | 344 | 7.76 | Nucleus |
GhDMT5 | CMTc | CotAD_49037 | Dt_chr2:8190450.8196335- | 496–781 | 2451 | 816 | 5.62 | Nucleus |
GhDMT6 | DNMT2 | CotAD_04205 | Dt_chr5:13787674.13791315+ | 13–389 | 1206 | 401 | 5.82 | Cell membrane, Endoplasmic reticulum |
GhDMT7 | DRM | CotAD_13275 | Dt_chr6:40651384.40655909- | 512–611 | 1878 | 625 | 4.72 | Chloroplast |
GhDMT8 | CMTd | CotAD_24264 | Dt_chr7:37416068.37421133+ | 230–632 | 2007 | 668 | 4.81 | Nucleus |
GhDMT9 | CMTb | CotAD_00990 | Dt_chr10: 6477855.6487242+ | 789–1157 | 3585 | 1194 | 8.51 | Nucleus |
GhDMT10 | CMTa | CotAD_00992 | Dt_chr10:6495924.6502242+ | 299–680 | 2094 | 697 | 6.75 | Nucleus |
GhDMT11 | CMTc | CotAD_14980 | scaffold39.1:602870.611908+ | 667–846 | 2646 | 881 | 6.94 | Nucleus |
GhDMT12 | DRM | CotAD_18652 | scaffold71.1:1581335.1591239- | 547–666 | 2031 | 676 | 4.91 | Cytoplasm |
GhDMT13 | CMTa | CotAD_41398 | scaffold294.1:1053646.1057162- | 319–500 | 1533 | 510 | 5.45 | Cytoplasm |
GhDMT14 | CMTb | CotAD_41399 | scaffold294.1:1063401:1074111- | 780–1161 | 3597 | 1198 | 8.71 | Nucleus |
GhDMT15 | MET | CotAD_46012 | scaffold1041.1:189137.194922+ | 1112–1541 | 4644 | 1547 | 5.57 | Nucleus |
GhDMT16 | CMTd | CotAD_40093 | scaffold2005.1:29096.35764+ | 453–828 | 2595 | 864 | 5.02 | Nucleus |