Mutation mapping of a variegated EMS tomato reveals an FtsH-like protein precursor potentially causing patches of four phenotype classes in the leaves with distinctive internal morphology

Table 5 SNP and indel with a 99% confidence interval of simulated SNP-index that were identified in sliding window regions

CHROM	POSI	variant	depth	p99	p95	SNP index	Blast hit
NC_015441.3	64710996	indel	25	0.84	0.84	0.96	-
NC_015441.3	64793524	indel	52	0.7885	0.7885	0.9615	-
NC_015441.3	64944775	indel	26	0.8462	0.8462	0.8462	PREDICTED: Solanum lycopersicum peroxidase 9 (LOC101264212), mRNA
NC_015441.3	65160699	indel	60	0.7833	0.7667	0.85	-
NC_015441.3	65732119	snp	73	0.7808	0.7534	0.9041	-
NC_015441.3	66068953	snp	68	0.7941	0.7647	0.7941	Solanum lycopersicum FtsH-like protein precursor (LOC100037730), mRNA
NC_015441.3	66170258	snp	69	0.7826	0.7681	0.8841	PREDICTED: Solanum lycopersicum BTB/POZ domain-containing protein At2g30600 (LOC101258455)

ISSN: 1471-2229