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Fig. 6 | BMC Plant Biology

Fig. 6

From: Mutation mapping of a variegated EMS tomato reveals an FtsH-like protein precursor potentially causing patches of four phenotype classes in the leaves with distinctive internal morphology

Fig. 6

MutMap chromosome plot representation of the distribution of SNPs across the chromosomes. BLUE dot: variant, RED line: mean SNP-index, a critical visualisation indicated significantly enriched in mutant bulk compared to wildtype, which identifying genomic regions on Chromosome 4 (NC_015441.3) as associated region with the variegated phenotype., ORANGE line: mean p99 (99% confidence interval of simulated SNP-index) SNPs that have a mutant allele frequency above the p99 threshold are considered significantly enriched in the variegated population then the candidate regions associated with variegated were identified in this region., GREEN line: mean p95 (95% confidence interval of simulated SNP-index), similar to p99 but consider confidence at 95%

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BMC Plant Biology

ISSN: 1471-2229

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