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Table 3 Types of SSRs detected in the C. ensifolium mitogenome (considering sequence complementary)

From: Assembly and comparative analysis of the complete multichromosomal mitochondrial genome of Cymbidium ensifolium, an orchid of high economic and ornamental value

SSR type

Repeats

Number of SSRs

Total

monomer

A/T

53

53

dimer

AC/GT

2

24

AG/CT

13

 

AT/AT

9

 

trimer

AAC/GTT

1

29

AAG/CTT

19

 

AAT/ATT

1

 

ACT/AGT

3

 

AGC/CTG

2

 

AGG/CCT

1

 

ATC/ATG

2

 

tetramer

AAAC/GTTT

1

53

AAAG/CTTT

24

 

AACT/AGTT

1

 

AAGC/CTTG

1

 

AAGG/CCTT

1

 

AAGT/ACTT

1

 

AATG/ATTC

4

 

ACAG/CTGT

1

 

ACAT/ATGT

1

 

ACCG/CGGT

1

 

ACGG/CCGT

1

 

ACGT/ACGT

1

 

ACTC/AGTG

2

 

ACTG/AGTC

4

 

AGAT/ATCT

4

 

AGCC/CTGG

1

 

AGCG/CGCT

1

 

AGCT/AGCT

1

 

ATCC/ATGG

1

 

CCGG/CCGG

1

 

pentamer

AGAGG/CCTCT

2

3

ATATC/ATATG

1

 

total

 

162

162