Assembly and comparative analysis of the complete multichromosomal mitochondrial genome of Cymbidium ensifolium, an orchid of high economic and ornamental value

Table 1 Functional classification of genes and physical location of the C. ensifolium mitogenome

Group of genes	Gene name	Length (bp)	Start codon	Stop codon	Amino acid
ATP synthase	atp1	1530	ATG	TGA	510
	atp4	579	ATG	TGA	193
	atp6	969	ATG	TAG	323
	atp8	480	ATG	TAA	160
	atp9	225	ATG	CGA(TGA)	75
Cytochrome c biogenesis	ccmB	621	ATG	TGA	207
	ccmC	723	ATG	TAG	241
	ccmFc	1317	ATG	CGA(TGA)	439
	ccmFn	1707	ATG	TGA	569
Ubiquinol cytochrome c reductase	cob	1182	ATG	TGA	394
Cytochrome c oxidase	cox1	1584	ATG	TAA	528
	cox2	801	ATG	TAG	267
	cox3	798	ATG	TGA	266
Maturases	matR	1899	ATG	TAG	633
Transport membrane protein	mttB	351	ATG	TAG	117
NADH dehydrogenase	nad1(3)	(978,978,978)	ACG(ATG)	TAA	326
	nad2 (2)	(1509,1509)	ATG	TGA	503
	nad3	357	ATG	TAG	119
	nad4	1488	ATG	TGA	496
	nad4L	303	ATG	TAA	101
	nad5 (3)	(2016,2106,2106)	ATG	TAA	672
	nad6	747	ATG	TAG	249
	nad7	1185	ATG	TAG	395
	nad9	573	ATG	TAA	191
Ribosomal proteins (LSU)	rpl16	348	ATG	TAA	116
Ribosomal proteins (LSU)	rpl5	546	ATG	TAA	182
Ribosomal proteins (SSU)	rps12	378	ATG	TGA	126
	rps13	351	ATG	TGA	117
	rps14	303	ATG	TAG	101
	rps7	447	ATG	TAA	149
Ribosomal RNAs	rrn18	1976
	rrn26	3225
	rrn5	119
Transfer RNAs	trnA-TGC	65
	trnC-GCA	(73,71)
	trnD-GTC	74
	trnE-TTC	(73,72)
	trnF-GAA	(73,73)
	trnG-GCC	71
	trnH-GTG	(74,74)
	trnI-TAT	71
	trnK-TTT	73
	trnL-CAA	81
	trnL-TAG	80
	trnM-CAT	(74,74,74,74)
	trnN-GTT	(72,72)
	trnQ-TTG	72
	trnR-ACG	74
	trnR-TCT	72
	trnS-AGA	67
	trnS-GCT	(77,77)
	trnS-GGA	87
	trnS-TGA	85
	trnT-TGT	(73,73)
	trnV-GAC	72
	trnW-CCA	(74,74)
	trnY-GTA	(83,84)

ISSN: 1471-2229