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Table 1 Genes annotated in the cp. genomes of Pulsatilla saxatilis

From: Comparative analysis of chloroplast genomes of Pulsatilla species reveals evolutionary and taxonomic status of newly discovered endangered species Pulsatilla saxatilis

Category

Function

Gene name

Photosynthesis

Subunits of ATP synthase (6)

atpA, atpB, atpE, atpF*, atpH, atpI

Subunits of NADH dehydrogenase (12)

ndhA *, ndhB *#, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome (6)

petA, petB *, petD *, petG, petL, petN

Subunits of photosystem I (5)

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II (15)

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Transcription and translation

Large subunit of ribosome (13)

rpl2 *#, rpl14#, rpl16 *#, rpl20, rpl22#, rpl23#, rpl33, rpl36

DNA dependent RNA polymerase (4)

rpoA, rpoB, rpoC1 *, rpoC2

Small subunit of ribosome (17)

rps2, rps3#, rps4, rps7#, rps8#, rps11, rps12 *#1, rps14, rps15, rps16 *, rps18, rps19#

rRNA Genes (8)

rrn4.5#, rrn5#, rrn16#, rrn23#

tRNA Genes (36)

trnA-UGC *#, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC *, trnH-GUG, trnI-CAU *#, trnI-GAU#, trnK-UUU *, trnL-CAA#, trnL-UAA *, trnL-UAG, trnfM-CAU, trnM-CAU, trnN-GUU#, trnP-UGG, trnQ-UUG, trnR-ACG#, trnR-UCU, trnS-GCU, trnS GGA, trnS-UGA, trnT-GGU, trnV-GAC#, trnV-UAC *, trnW-CCA, trnY-GUA

Other genes

Subunit of rubisco (1)

rbcL

Subunit of Acetyl-CoA-carboxylase (1)

accD

c-type cytochrome synthesis gene (1)

ccsA

Envelop membrane protein (1)

cemA

Protease (1)

clpP **

Maturase (1)

matK

Unknown function

Conserved open reading frames (6)

ycf 1#, ycf 2#, ycf 3 **, ycf 4

  1. Note *genes containing one intron, **genes containing two introns, #gene in the IR region with two copies present, 1 trans-spliced genes