Table 1 List of DEmiRs and their predicted target genes exhibiting anti-correlated differential expression changes with DEmiRs
miRNA ID | Log2FC (miRNA, 60DAH/30DAH) | Target ID (RAP-DB) | Pairing Score | Description/Gene Name | Log2FC (Gene, 60DAH/30DAH) |
|---|---|---|---|---|---|
osa-miR408-3p | -1.02 | Os01g0860450 | 4.0 | Hypothetical protein. | 1.45 |
osa-miR528-5p | -1.56 | Os01g0762000 | 3.5 | OspPLAIValpha | 1.22 |
Os01g0519050 | 4.0 | Hypothetical gene. | 1.76 | ||
osa-miR531b | -3.17 | Os01g0589000 | 3.0 | Nucleic acid-binding, OB-fold domain containing protein. | 1.19 |
Os06g0308000 | 3.0 | OsTIG | 1.23 | ||
Os11g0186900 | 3.0 | OsACO4 | 4.43 | ||
Os05g0521500 | 3.5 | Peptidase S16, lon N-terminal domain containing protein. | 1.15 | ||
Os07g0538000 | 3.5 | 1-3,1-4-beta-glucanase. | 3.56 | ||
Os11g0507200 | 4.0 | Similar to transferase. | 3.24 | ||
osa-miR1846a-5p | -1.46 | Os03g0561400 | 3.5 | Conserved hypothetical protein. | 2.02 |
Os03g0203200 | 4.0 | HTD2|D88|D14 | 1.61 | ||
osa-miR1848 | -4.18 | Os08g0412700 | 2.5 | Protein of unknown function DUF1262 family protein. | 1.48 |
Os01g0321300 | 3.0 | Similar to Protein translocase subunit secA. | 1.06 | ||
Os03g0267100 | 3.0 | Hypothetical protein. | 1.32 | ||
Os06g0114366 | 3.0 | Pentatricopeptide repeat domain containing protein. | 1.07 | ||
Os05g0522600 | 3.5 | Leucine-rich repeat, plant specific containing protein. | 1.42 | ||
Os07g0538000 | 3.5 | 1-3,1-4-beta-glucanase. | 3.56 | ||
Os07g0572100 | 3.5 | DAO | 2.76 | ||
osa-miR5493 | -2.72 | Os01g0926400 | 4.0 | Similar to Pectin-glucuronyltransferase. | 1.11 |
Os03g0693900 | 4.0 | OsOXO3|OsGLP3-5 | 7.58 | ||
Os03g0694000 | 4.0 | OsOXO4|OsGLP3-6 | 6.56 | ||
osa-miR5504 | -2.06 | Os12g0169950 | 4.0 | Hypothetical gene. | 1.36 |
osa-miR820c | -0.72 | Os07g0687900 | 4.0 | OsGolS2|wsi76 | 1.73 |
osa-miR166i-5p | 1.16 | Os01g0607900 | 2.0 | OsRPK1 | -3.35 |
Os04g0435500 | 3.0 | OsTCHQD1 | -1.97 | ||
Os01g0263300 | 3.5 | OsPOX1|ddOs319 | -1.75 | ||
Os08g0127500 | 3.5 | Acid phosphatase/vanadium-dependent haloperoxidase related family protein. | -1.31 | ||
Os06g0705000 | 4.0 | OsGMT1/OsGT64A | -1.45 | ||
osa-miR171h | 2.96 | Os03g0302800 | 1.5 | Similar to Long cell-linked locus protein. | -8.69 |
Os03g0184500 | 4.0 | Transcriptional factor B3 family protein. | -1.25 | ||
osa-miR319a-3p | 2.13 | Os02g0628600 | 3.0 | ARF8 | -2.64 |
Os08g0442700 | 3.0 | COE1 | -3.31 | ||
Os03g0204300 | 4.0 | Conserved hypothetical protein. | -1.34 | ||
Os03g0591300 | 4.0 | Helix-loop-helix DNA-binding domain containing protein. | -4.16 | ||
Os08g0561500 | 4.0 | Similar to nodulin-like protein 5NG4. | -2.37 | ||
Os11g0539000 | 4.0 | OsSTA262 | -1.09 | ||
osa-miR390-5p | 0.92 | Os03g0314750 | 3.0 | Hypothetical conserved gene. | -3.00 |
Os08g0410266 | 3.5 | Protein of unknown function DUF295 domain containing protein. | -1.52 | ||
Os08g0446400 | 3.5 | Leucine-rich repeat, N-terminal domain containing protein. | -1.33 | ||
Os04g0571600 | 4.0 | OsMATE19 | -6.41 | ||
osa-miR437 | 1.16 | Os01g0872000 | 2.5 | NPF5.21 | -3.45 |
Os02g0762100 | 2.5 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase | -1.09 | ||
Os06g0657500 | 3.0 | PLT2 | -1.17 | ||
Os05g0566400 | 3.5 | OsMPK7|OsMAPK20-5 | -2.25 | ||
Os02g0186200 | 4.0 | Similar to Cytochrome P450 CYP71K14. | -1.05 | ||
osa-miR1861h | 3.10 | Os01g0733500 | 4.0 | RD22| OsBURP3 | -1.30 |
osa-miR2090 | 1.91 | Os03g0302200 | 3.0 | OsHIRP1 | -2.32 |
Os04g0453400 | 4.0 | OsSTP17 | -1.68 | ||
Os05g0486300 | 4.0 | Similar to CCR4-NOT transcription complex subunit 2. | -1.58 | ||
osa-miR5827 | 1.50 | Os07g0568700 | 3.0 | OsFOR1|PGIP | -1.96 |
Os03g0728900 | 3.5 | Helix-loop-helix DNA-binding domain containing protein. | -1.13 | ||
Os01g0661700 | 4.0 | Hypothetical gene. | -3.54 | ||
Os02g0579800 | 4.0 | OsFWL2 | -1.22 | ||
Os02g0756600 | 4.0 | Phosphate-induced protein 1 | -2.36 | ||
Os07g0252400 | 4.0 | OsCESA6 | -3.02 | ||
Os08g0144100 | 4.0 | CML32 | -4.25 |