Table 4 Paralogous relationships between segmental pairs of RNA helicase genes in rapeseed. Chromosomal location 0 means unknown specific gene location on B. napus genome. Chr., Ka, Ks and λ represents chromosome, nonsynonymous, synonymous and time duplication and divergence, respectively
Gene_1 | Chr. | Start1 | Stop1 | Start2-Stop2 | Gene_2 | Chr. | Start 2 | Stop2 | Start2-Stop2 | Ka/Ks | Ka | Ks | E-Value | Ks/2Æ› |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BnRH-020 | 9 | 155278 | 156587 | 1309 | BnRH-035 | 0 | 108823 | 111283 | 2460 | 0.5034 | 0.02242 | 0.044545 | 0 | 3395160.1 |
BnRH-019 | 9 | 374305 | 376452 | 2147 | BnRH-024 | 10 | 69125 | 70432 | 1307 | 1.0232 | 0.3585 | 0.3504 | 0 | 26707317 |
BnRH-043 | 6 | 267642 | 269840 | 2198 | BnRH-018 | 10 | 19064 | 20718 | 1654 | 0.9503 | 0.3277 | 0.3449 | 0 | 26288110 |
BnRH-004 | 5 | 451258 | 452136 | 878 | BnRH-012 | 1 | 146054 | 149326 | 3272 | 0.9206 | 0.3519 | 0.3822 | 0 | 29131098 |
BnRH-005 | 3 | 1494980 | 1498357 | 3377 | BnRH-003 | 7 | 209724 | 211043 | 1319 | 1.0456 | 0.4534 | 0.4336 | 0 | 33048780 |
BnRH-021 | 9 | 295276 | 301212 | 5936 | BnRH-032 | 1 | 10280 | 12945 | 2665 | 0.9793 | 0.8722 | 0.8906 | 0 | 67881098 |
BnRH-037 | 7 | 3665918 | 3669619 | 3701 | BnRH-034 | 2 | 491779 | 494667 | 2888 | 1.0309 | 0.2948 | 0.2859 | 0 | 21791159 |
BnRH-044 | 3 | 1134199 | 1134990 | 791 | BnRH-049 | 3 | 896000 | 898879 | 2879 | 1.0882 | 0.2365 | 0.2173 | 0 | 16562500 |
BnRH-008 | 4 | 541313 | 545395 | 4082 | BnRH-010 | 6 | 420376 | 423140 | 2764 | 1.0468 | 0.4405 | 0.4208 | 0 | 32073171 |
BnRH-041 | 2 | 591701 | 593387 | 1686 | BnRH-002 | 9 | 208559 | 211653 | 3094 | 0.8414 | 0.04603 | 0.054706 | 0 | 4169643.3 |
BnRH-060 | 3 | 590717 | 593629 | 2912 | BnRH-072 | 2 | 2633 | 5008 | 2375 | 0.9149 | 0.07868 | 0.085991 | 0 | 6554211.1 |
BnRH-061 | 3 | 590717 | 593629 | 2912 | BnRH-077 | 2 | 2633 | 5008 | 2375 | 0.9473 | 0.07912 | 0.083519 | 0 | 6365742.4 |
BnRH-069 | 7 | 3053762 | 3054853 | 1091 | BnRH-052 | 3 | 229605 | 232399 | 2794 | 0.907 | 0.2966 | 0.327 | 0 | 24923780 |
BnRH-066 | 5 | 1524365 | 1525636 | 1271 | BnRH-058 | 3 | 153299 | 156485 | 3186 | 1.2125 | 0.3236 | 0.2669 | 0 | 20342988 |
BnRH-053 | 3 | 1138324 | 1139205 | 881 | BnRH-050 | 3 | 896794 | 898879 | 2085 | 1.0637 | 0.2186 | 0.2055 | 0 | 15663110 |
BnRH-101 | 3 | 677191 | 678483 | 1292 | BnRH-097 | 3 | 524321 | 526803 | 2482 | 1.0123 | 0.2922 | 0.2886 | 0 | 21996951 |
BnRH-082 | 8 | 462969 | 464615 | 1646 | BnRH-102 | 4 | 68703 | 70360 | 1657 | 1.3324 | 0.3288 | 0.2467 | 0 | 18803354 |
BnRH-104 | 5 | 1747505 | 1749879 | 2374 | BnRH-089 | 5 | 451258 | 452136 | 878 | 0.9073 | 0.5462 | 0.6021 | 0 | 45891768 |
BnRH-099 | 3 | 1103675 | 1105270 | 1595 | BnRH-081 | 8 | 241092 | 242806 | 1714 | 0.8312 | 0.03467 | 0.04171 | 0 | 3179142.5 |
BnRH-096 | 1 | 472691 | 474941 | 2250 | BnRH-092 | 1 | 94903 | 97128 | 2225 | 1.1518 | 0.2171 | 0.1885 | 0 | 14367378 |
BnRH-043 | 6 | 267642 | 269840 | 2198 | BnRH-018 | 10 | 19064 | 20718 | 1654 | 0.9503 | 0.3277 | 0.3449 | 0 | 26288110 |
BnRH-100 | 3 | 1134199 | 1134990 | 791 | BnRH-080 | 8 | 240722 | 242806 | 2084 | 1.0791 | 0.2371 | 0.2197 | 0 | 16745427 |
BnRH-087 | 9 | 1343959 | 1346143 | 2184 | BnRH-083 | 8 | 462969 | 464615 | 1646 | 1.1999 | 0.2959 | 0.2466 | 0 | 18795732 |
BnRH-117 | 3 | 590714 | 593629 | 2915 | BnRH-129 | 7 | 209724 | 211043 | 1319 | 1.222 | 0.5148 | 0.4213 | 0 | 32111280 |
BnRH-100 | 3 | 1134199 | 1134990 | 791 | BnRH-080 | 8 | 240722 | 242806 | 2084 | 1.0791 | 0.2371 | 0.2197 | 0 | 16745427 |