Table 3 Paralogous relationships between tandems duplicated pairs of RNA helicase genes in rapeseed. Chromosomal location 0 means unknown specific gene location on B. napus genome. Chr., Ka, Ks and λ represents chromosome, nonsynonymous, synonymous and time duplication and divergence, respectively
Gene_1 | Chr. | Start1 | Stop1 | Start1-Stop1 | Gene_2 | Chr. | Start 2 | Stop2 | Start2-Stop2 | E-Value | Ka/Ks | Ka | Ks | Ks/2Æ› |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BnRH-007 | 6 | 233177 | 235993 | 2816 | BnRH-030 | 1 | 1241658 | 1243017 | 1359 | 0 | 1.3118 | 0.2379 | 0.1813 | 13818598 |
BnRH-001 | 3 | 341531 | 342724 | 1193 | BnRH-038 | 5 | 1247232 | 1248941 | 1709 | 0 | 1.09 | 0.1333 | 0.1223 | 9321646 |
BnRH-036 | 3 | 169756 | 172283 | 2527 | BnRH-033 | 3 | 169756 | 172000 | 2244 | 0 | 0.8748 | 0.000875 | 0.000551 | 41967.23 |
BnRH-025 | 3 | 169756 | 172283 | 2527 | BnRH-022 | 3 | 169756 | 172283 | 2527 | 0 | 0.8748 | 0.000875 | 0.000551 | 41967.23 |
BnRH-031 | 0 | 84287 | 85342 | 1055 | BnRH-006 | 4 | 134261 | 136180 | 1919 | 0 | 1.1996 | 0.5231 | 0.4361 | 33239329 |
BnRH-027 | 1 | 168717 | 171031 | 2314 | BnRH-023 | 1 | 433518 | 436114 | 2596 | 0 | 0.8217 | 0.002943 | 0.003581 | 272954.3 |
BnRH-013 | 5 | 306071 | 307747 | 1676 | BnRH-009 | 7 | 1364611 | 1367118 | 2507 | 0 | 0.8486 | 0.1736 | 0.2046 | 15594512 |
BnRH-029 | 1 | 11494 | 12584 | 1090 | BnRH-028 | 1 | 11494 | 12584 | 1090 | 0 | 1.3688 | 0.009476 | 0.006923 | 527629.6 |
BnRH-047 | 2 | 460676 | 462247 | 1571 | BnRH-014 | 7 | 3053762 | 3055444 | 1682 | 0 | 1.3844 | 0.5952 | 0.4299 | 32766768 |
BnRH-050 | 3 | 896794 | 898879 | 2085 | BnRH-048 | 3 | 896000 | 898879 | 2879 | 0 | 0.7491 | 0.1788 | 0.2387 | 18193598 |
Bn_RH011 | 7 | 28076 | 33816 | 5740 | BnRH-040 | 3 | 1311916 | 1314072 | 2156 | 0 | 0.9254 | 0.2289 | 0.2473 | 18849085 |
BnRH-075 | 2 | 2633 | 5008 | 2375 | BnRH-074 | 2 | 2633 | 5008 | 2375 | 0 | 0 | 0 | 1E-10 | 0.007622 |
BnRH-065 | 2 | 2633 | 5008 | 2375 | BnRH-062 | 3 | 590717 | 593629 | 2912 | 0 | 0 | 0 | 1E-10 | 0.007622 |
BnRH-073 | 2 | 2633 | 5008 | 2375 | BnRH-059 | 3 | 590717 | 593629 | 2912 | 0 | 1.1429 | 0.001558 | 0.001363 | 103874.2 |
BnRH-064 | 2 | 2633 | 5008 | 2375 | BnRH-076 | 2 | 2633 | 5008 | 2375 | 0 | 0 | 0 | 1E-10 | 0.007622 |
BnRH-055 | 3 | 655559 | 656710 | 1151 | BnRH-067 | 5 | 1522842 | 1525636 | 2794 | 0 | 0.9334 | 0.3113 | 0.3336 | 25426829 |
BnRH-068 | 5 | 1978 | 4329 | 2351 | BnRH-056 | 3 | 314013 | 315563 | 1550 | 0 | 0.9634 | 0.3171 | 0.3291 | 25083841 |
BnRH-078 | 2 | 2633 | 5008 | 2375 | BnRH-054 | 3 | 655559 | 656710 | 1151 | 0 | 1.0013 | 0.298 | 0.2976 | 22682927 |
BnRH-057 | 3 | 153299 | 156485 | 3186 | BnRH-071 | 2 | 1036267 | 1040371 | 4104 | 0 | 0.8342 | 0.1178 | 0.1412 | 10762195 |
BnRH-079 | 8 | 240734 | 242806 | 2072 | BnRH-051 | 3 | 896803 | 898879 | 2076 | 0 | 1.0233 | 0.043114 | 0.042132 | 3211308 |
BnRH-090 | 5 | 451258 | 452136 | 878 | BnRH-094 | 5 | 1247232 | 1248941 | 1709 | 0 | 1.0508 | 0.3283 | 0.3124 | 23810976 |
BnRH-098 | 1 | 10280 | 12945 | 2665 | BnRH-106 | 5 | 200412 | 202272 | 1860 | 0 | 0.9622 | 0.1644 | 0.1709 | 13025915 |
BnRH-109 | 1 | 43353 | 45903 | 2550 | BnRH-108 | 1 | 43353 | 45903 | 2550 | 0 | 0.288 | 0.000399 | 0.001387 | 105708.1 |
BnRH-103 | 4 | 68703 | 70360 | 1657 | BnRH-107 | 5 | 200412 | 202272 | 1860 | 0 | 1.0846 | 0.3594 | 0.3313 | 25251524 |
BnRH-095 | 5 | 1248996 | 1250125 | 1129 | BnRH-085 | 8 | 22190 | 25263 | 3073 | 0 | 1.2089 | 0.2711 | 0.2243 | 17096037 |
BnRH-105 | 5 | 200412 | 202272 | 1860 | BnRH-091 | 3 | 498725 | 502353 | 3628 | 0 | 0.9408 | 0.3901 | 0.4147 | 31608232 |
BnRH-116 | 2 | 1146345 | 1150499 | 4154 | BnRH-115 | 2 | 1146345 | 1150499 | 4154 | 0 | 0.5305 | 0.00053 | 0.000323 | 24590.7 |
BnRH-114 | 1 | 472691 | 474941 | 2250 | Bn_RH111 | 6 | 1333558 | 1338750 | 5192 | 0 | 0.9256 | 0.2283 | 0.2466 | 18795732 |
BnRH-126 | 8 | 239870 | 242806 | 2936 | BnRH-112 | 9 | 1343959 | 1345272 | 1313 | 0 | 0.5712 | 0.037246 | 0.065207 | 4970027 |
BnRH-132 | 3 | 341531 | 342724 | 1193 | BnRH-124 | 5 | 2024226 | 2028422 | 4196 | 0 | 0.9749 | 0.4566 | 0.4684 | 35701220 |
BnRH-133 | 4 | 541313 | 545395 | 4082 | Bn_RH110 | 6 | 1333558 | 1338750 | 5192 | 0 | 0.9538 | 0.3104 | 0.3254 | 24801829 |
BnRH-131 | 5 | 451258 | 452136 | 878 | BnRH-130 | 5 | 451258 | 452136 | 878 | 0 | 0.4357 | 0.000436 | 1E-10 | 0.007622 |
BnRH-127 | 6 | 267642 | 269831 | 2189 | BnRH-120 | 7 | 1364611 | 1367004 | 2393 | 0 | 1.149 | 0.3859 | 0.3358 | 25594512 |
BnRH-121 | 5 | 11924 | 14339 | 2415 | BnRH-118 | 5 | 11939 | 13951 | 2012 | 0 | 1.659 | 0.008056 | 0.004856 | 370086.9 |