Table 2 Position, protein length and chromosomal location, protein length, isoelectric point and molecular weight of RHs genes identified in rapeseed. Chromosomal location 0 means unknown specific gene location on B. napus genome
Generic Name | Accession number | Locus Tag(Chr) | Start position(bp) | End position(bp) | Sequence Length | Location | PI | MW (kDa) | Protein Length(aa) |
|---|---|---|---|---|---|---|---|---|---|
BnRH-001 | XP_013641459.1 | 3 | 341531 | 342724 | 1193 | Nuclear | 9.33 | 65.90923 | 583 |
BnRH-002 | XP_013642084.1 | 9 | 208559 | 211653 | 3094 | Nuclear | 8.68 | 81.68811 | 723 |
BnRH-003 | XP_013642191.1 | 7 | 209724 | 211043 | 1319 | None | 5.3 | 131.7769 | 1167 |
BnRH-004 | XP_013642261.1 | 5 | 451258 | 452136 | 878 | Nuclear | 5.63 | 134.0163 | 1172 |
BnRH-005 | XP_013642587.1 | 3 | 1494980 | 1498357 | 3377 | Cytoplasmic | 6.12 | 150.1436 | 1341 |
BnRH-006 | XP_013642882.1 | 4 | 134261 | 136180 | 1919 | None | 5.89 | 88.75401 | 784 |
BnRH-007 | XP_013643004.1 | 6 | 233177 | 235993 | 2816 | None | 9.13 | 79.96606 | 711 |
BnRH-008 | XP_013643558.1 | 4 | 541313 | 545395 | 4082 | None | 7.85 | 144.5641 | 1300 |
BnRH-009 | XP_013643805.1 | 7 | 1364611 | 1367118 | 2507 | Nuclear | 8.67 | 80.94812 | 750 |
BnRH-010 | XP_013644733.1 | 6 | 420376 | 423140 | 2764 | Nuclear | 6.53 | 133.6476 | 1171 |
BnRH-011 | XP_013644857.1 | 7 | 28076 | 33816 | 5740 | Cytoplasmic | 8.76 | 127.7522 | 1135 |
BnRH-012 | XP_013645934.1 | 1 | 146054 | 149326 | 3272 | Nuclear | 9.08 | 86.0119 | 762 |
BnRH-013 | XP_013647906.1 | 5 | 306071 | 307747 | 1676 | Nuclear | 9.21 | 63.50123 | 602 |
BnRH-014 | XP_013650345.1 | 7 | 3053762 | 3055444 | 1682 | Nuclear | 6.29 | 65.76943 | 588 |
BnRH-015 | XP_013652066.1 | 7 | 3053762 | 3055444 | 1682 | Nuclear | 6.29 | 65.90809 | 591 |
BnRH-016 | XP_013653825.1 | 9 | 77998 | 79107 | 1109 | None | 9.49 | 87.73748 | 779 |
BnRH-017 | XP_013655152.1 | 8 | 526 | 2841 | 2315 | Nuclear | 8.34 | 72.76071 | 644 |
BnRH-018 | XP_013656160.1 | 10 | 19064 | 20718 | 1654 | Nuclear | 8.32 | 74.95494 | 671 |
BnRH-019 | XP_013661111.1 | 9 | 374305 | 376452 | 2147 | Nuclear | 9.31 | 63.30078 | 584 |
BnRH-020 | XP_013661582.1 | 9 | 155278 | 156587 | 1309 | None | 9.36 | 87.86369 | 779 |
BnRH-021 | XP_013661716.1 | 9 | 295276 | 301212 | 5936 | None | 6 | 162.6938 | 1454 |
BnRH-022 | XP_013661881.1 | 3 | 169756 | 172283 | 2527 | Nuclear | 5.4 | 48.32136 | 427 |
BnRH-023 | XP_013664768.1 | 1 | 433518 | 436114 | 2596 | Mitochondrial | 8.83 | 64.1609 | 571 |
BnRH-024 | XP_013666728.1 | 10 | 69125 | 70432 | 1307 | Nuclear | 8.84 | 84.10664 | 744 |
BnRH-025 | XP_013668087.1 | 3 | 169756 | 172283 | 2527 | Nuclear | 5.39 | 48.29331 | 427 |
BnRH-026 | XP_013668088.1 | 3 | 169756 | 172283 | 2527 | Nuclear | 5.46 | 48.32046 | 427 |
BnRH-027 | XP_013668464.1 | 1 | 168717 | 171031 | 2314 | None | 8.85 | 67.42601 | 597 |
BnRH-028 | XP_013669288.2 | 1 | 11494 | 12584 | 1090 | Nuclear | 8.55 | 120.6485 | 1073 |
BnRH-029 | XP_013669290.2 | 1 | 11494 | 12584 | 1090 | Nuclear | 7.84 | 88.11516 | 777 |
BnRH-030 | XP_013670607.1 | 1 | 1241658 | 1243017 | 1359 | Nuclear | 8.67 | 69.30655 | 624 |
BnRH-031 | XP_013670873.2 | 0 | 84287 | 85342 | 1055 | None | 6.35 | 136.4882 | 1207 |
BnRH-032 | XP_013672528.1 | 1 | 10280 | 12945 | 2665 | Nuclear | 6.12 | 111.9179 | 988 |
BnRH-033 | XP_013673115.2 | 3 | 169756 | 172000 | 2244 | Nuclear | 6.28 | 39.07519 | 344 |
BnRH-034 | XP_013676146.1 | 2 | 491779 | 494667 | 2888 | Nuclear | 8.69 | 66.58459 | 594 |
BnRH-035 | XP_013678233.1 | 0 | 108823 | 111283 | 2460 | Cytoplasmic | 9.07 | 50.28709 | 448 |
BnRH-036 | XP_013679045.1 | 3 | 169756 | 172283 | 2527 | Nuclear | 5.34 | 48.37537 | 427 |
BnRH-037 | XP_013681379.1 | 7 | 3665918 | 3669619 | 3701 | Nuclear | 9.88 | 93.88803 | 852 |
BnRH-038 | XP_013682891.1 | 5 | 1247232 | 1248941 | 1709 | Nuclear | 9.1 | 65.01979 | 576 |
BnRH-039 | XP_013683473.2 | 3 | 677191 | 678483 | 1292 | Nuclear | 9.7 | 79.01425 | 686 |
BnRH-040 | XP_013683593.2 | 3 | 1311916 | 1314072 | 2156 | Cytoplasmic | 8.4 | 111.1316 | 1002 |
BnRH-041 | XP_013683613.1 | 2 | 591701 | 593387 | 1686 | Nuclear | 6.66 | 77.72024 | 691 |
BnRH-042 | XP_022552831.1 | 2 | 185221 | 188261 | 3040 | None | 8.69 | 127.592 | 1128 |
BnRH-043 | XP_022553276.1 | 6 | 267642 | 269840 | 2198 | Nuclear | 5.29 | 55.11382 | 491 |
BnRH-044 | XP_022553334.1 | 3 | 1134199 | 1134990 | 791 | None | 6.3 | 49.18817 | 433 |
BnRH-045 | XP_022554310.1 | 3 | 169756 | 172000 | 2244 | None | 6.83 | 39.08528 | 344 |
BnRH-046 | XP_022554728.1 | 2 | 805550 | 806829 | 1279 | None | 9.52 | 72.33683 | 678 |
BnRH-047 | XP_022554729.1 | 2 | 460676 | 462247 | 1571 | None | 9.45 | 71.83726 | 674 |
BnRH-048 | XP_022554897.1 | 3 | 896000 | 898879 | 2879 | Nuclear | 7.56 | 82.93802 | 728 |
BnRH-049 | XP_022554898.1 | 3 | 896000 | 898879 | 2879 | Nuclear | 6.96 | 82.52553 | 725 |
BnRH-050 | XP_022554899.1 | 3 | 896794 | 898879 | 2085 | Nuclear | 5.67 | 60.86225 | 545 |
BnRH-051 | XP_022554900.1 | 3 | 896803 | 898879 | 2076 | Nuclear | 5.67 | 60.69204 | 543 |
BnRH-052 | XP_022554991.1 | 3 | 229605 | 232399 | 2794 | None | 10 | 68.58063 | 621 |
BnRH-053 | XP_022555160.1 | 3 | 1138324 | 1139205 | 881 | Nuclear | 6 | 49.31524 | 433 |
BnRH-054 | XP_022555294.1 | 3 | 655559 | 656710 | 1151 | Nuclear | 9.04 | 65.05093 | 576 |
BnRH-055 | XP_022555295.1 | 3 | 655559 | 656710 | 1151 | Nuclear | 9.04 | 65.05093 | 576 |
BnRH-056 | XP_022555315.1 | 3 | 314013 | 315563 | 1550 | None | 8.81 | 112.5296 | 1023 |
BnRH-057 | XP_022555636.1 | 3 | 153299 | 156485 | 3186 | Nuclear | 8.34 | 78.63318 | 701 |
BnRH-058 | XP_022555637.1 | 3 | 153299 | 156485 | 3186 | Nuclear | 8.34 | 78.63318 | 701 |
BnRH-059 | XP_022556805.1 | 3 | 590717 | 593629 | 2912 | Nuclear | 5.46 | 248.6525 | 2188 |
BnRH-060 | XP_022556806.1 | 3 | 590717 | 593629 | 2912 | Nuclear | 5.46 | 248.6525 | 2188 |
BnRH-061 | XP_022556806.1 | 3 | 590717 | 593629 | 2912 | Nuclear | 5.46 | 248.6525 | 2188 |
BnRH-062 | XP_022556805.1 | 3 | 590717 | 593629 | 2912 | Nuclear | 5.46 | 248.6525 | 2188 |
BnRH-063 | XP_022557328.1 | 4 | 267662 | 269741 | 2079 | Cytoplasmic | 8.38 | 58.2996 | 510 |
BnRH-064 | XP_022559130.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-065 | XP_022559133.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.49 | 97.93944 | 872 |
BnRH-066 | XP_022559296.1 | 5 | 1524365 | 1525636 | 1271 | Nuclear | 8.81 | 39.11425 | 350 |
BnRH-067 | XP_022559343.1 | 5 | 1522842 | 1525636 | 2794 | Nuclear | 8.4 | 118.7235 | 1040 |
BnRH-068 | XP_022559620.1 | 5 | 1978 | 4329 | 2351 | Nuclear | 6.4 | 71.68714 | 630 |
BnRH-069 | XP_022560593.1 | 7 | 3053762 | 3054853 | 1091 | Nuclear | 6.29 | 65.7895 | 587 |
BnRH-070 | XP_022560750.1 | 7 | 2090122 | 2092347 | 2225 | Cytoplasmic | 8.41 | 68.29908 | 640 |
BnRH-071 | XP_022561763.1 | 2 | 1036267 | 1040371 | 4104 | Nuclear | 5.92 | 115.022 | 1022 |
BnRH-072 | XP_022562044.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-073 | XP_022562045.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-074 | XP_022562046.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-075 | XP_022562047.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-076 | XP_022562048.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-077 | XP_022562049.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-078 | XP_022562050.1 | 2 | 2633 | 5008 | 2375 | Nuclear | 5.59 | 104.6118 | 931 |
BnRH-079 | XP_022563558.1 | 8 | 240734 | 242806 | 2072 | Nuclear | 5.85 | 61.04151 | 546 |
BnRH-080 | XP_022563559.1 | 8 | 240722 | 242806 | 2084 | Nuclear | 5.71 | 60.13258 | 537 |
BnRH-081 | XP_022563560.1 | 8 | 241092 | 242806 | 1714 | Nuclear | 5.71 | 58.93916 | 526 |
BnRH-082 | XP_022563577.1 | 8 | 462969 | 464615 | 1646 | Mitochondrial | 9.38 | 60.27747 | 550 |
BnRH-083 | XP_022563578.1 | 8 | 462969 | 464615 | 1646 | Mitochondrial | 9.38 | 60.27747 | 550 |
BnRH-084 | XP_022563579.1 | 8 | 462969 | 464615 | 1646 | Mitochondrial | 9.38 | 60.27747 | 550 |
BnRH-085 | XP_022563985.1 | 8 | 22190 | 25263 | 3073 | Nuclear | 5.58 | 89.22268 | 791 |
BnRH-086 | XP_022565518.1 | 9 | 145949 | 147948 | 1999 | Cytoplasmic | 9.38 | 37.58496 | 331 |
BnRH-087 | XP_022565745.1 | 9 | 1343959 | 1346143 | 2184 | Nuclear | 9.42 | 71.41801 | 656 |
BnRH-088 | XP_022566116.1 | 9 | 300950 | 304250 | 3300 | Cytoplasmic | 7.63 | 76.66016 | 681 |
BnRH-089 | XP_022566256.1 | 5 | 451258 | 452136 | 878 | Nuclear | 5.92 | 133.4735 | 1165 |
BnRH-090 | XP_022566256.1 | 5 | 451258 | 452136 | 878 | Nuclear | 5.92 | 133.4735 | 1165 |
BnRH-091 | XP_022566753.1 | 3 | 498725 | 502353 | 3628 | Chloroplast | 6.72 | 197.595 | 1757 |
BnRH-092 | XP_022568937.1 | 1 | 94903 | 97128 | 2225 | Nuclear | 8.57 | 102.6114 | 893 |
BnRH-093 | XP_022569691.1 | 5 | 1248996 | 1250125 | 1129 | Nuclear | 9 | 63.4981 | 562 |
BnRH-094 | XP_022570372.1 | 5 | 1247232 | 1248941 | 1709 | Nuclear | 9.1 | 65.01979 | 576 |
BnRH-095 | XP_022570373.1 | 5 | 1248996 | 1250125 | 1129 | Nuclear | 9 | 63.4981 | 562 |
BnRH-096 | XP_022570388.1 | 1 | 472691 | 474941 | 2250 | Nuclear | 6.08 | 42.55468 | 384 |
BnRH-097 | XP_022572398.1 | 3 | 524321 | 526803 | 2482 | Cytoplasmic | 9.13 | 51.15402 | 454 |
BnRH-098 | XP_022572540.1 | 1 | 10280 | 12945 | 2665 | Nuclear | 7.17 | 94.10989 | 826 |
BnRH-099 | XP_022572585.1 | 3 | 1103675 | 1105270 | 1595 | Nuclear | 5.34 | 61.69911 | 554 |
BnRH-100 | XP_022572983.1 | 3 | 1134199 | 1134990 | 791 | Nuclear | 5.31 | 33.21523 | 294 |
BnRH-101 | XP_022574002.1 | 3 | 677191 | 678483 | 1292 | Nuclear | 9.62 | 77.20646 | 673 |
BnRH-102 | XP_022574172.1 | 4 | 68703 | 70360 | 1657 | Cytoplasmic | 7.19 | 66.41617 | 614 |
BnRH-103 | XP_022574173.1 | 4 | 68703 | 70360 | 1657 | Cytoplasmic | 7.19 | 66.41617 | 614 |
BnRH-104 | XP_022575207.1 | 5 | 1747505 | 1749879 | 2374 | None | 5.93 | 148.0964 | 1330 |
BnRH-105 | XP_022575571.1 | 5 | 200412 | 202272 | 1860 | Nuclear | 6.14 | 110.9465 | 988 |
BnRH-106 | XP_022575572.1 | 5 | 200412 | 202272 | 1860 | Nuclear | 6.14 | 110.9465 | 988 |
BnRH-107 | XP_022575574.1 | 5 | 200412 | 202272 | 1860 | Nuclear | 6.14 | 110.9465 | 988 |
BnRH-108 | XP_022575630.1 | 1 | 43353 | 45903 | 2550 | None | 5.08 | 130.0163 | 1184 |
BnRH-109 | XP_022575632.1 | 1 | 43353 | 45903 | 2550 | None | 5.57 | 121.4964 | 1104 |
BnRH-110 | XP_022576263.1 | 6 | 1333558 | 1338750 | 5192 | None | 9.16 | 132.7857 | 1180 |
BnRH-111 | XP_022576264.1 | 6 | 1333558 | 1338750 | 5192 | None | 9.16 | 132.7857 | 1180 |
BnRH-112 | XP_022576283.1 | 9 | 1343959 | 1345272 | 1313 | Nuclear | 9.14 | 49.32652 | 455 |
BnRH-113 | XP_013740565.1 | 3 | 729532 | 732365 | 2833 | Nuclear | 9.1 | 55.19874 | 496 |
BnRH-114 | XP_013725991.1 | 1 | 472691 | 474941 | 2250 | Nuclear | 8.27 | 77.47191 | 694 |
BnRH-115 | XP_013679449.1 | 2 | 1146345 | 1150499 | 4154 | Nuclear | 6.15 | 141.0769 | 1248 |
BnRH-116 | XP_013679452.1 | 2 | 1146345 | 1150499 | 4154 | Nuclear | 6.15 | 141.148 | 1248 |
BnRH-117 | XP_013695003.1 | 3 | 590714 | 593629 | 2915 | Nuclear | 5.45 | 248.6708 | 2186 |
BnRH-118 | XP_013731451.1 | 5 | 11939 | 13951 | 2012 | Nuclear | 8.67 | 59.79658 | 540 |
BnRH-119 | XP_013734891.1 | 3 | 1103675 | 1106068 | 2393 | Nuclear | 6.36 | 80.89966 | 711 |
BnRH-120 | XP_013737451.1 | 7 | 1364611 | 1367004 | 2393 | Chloroplast | 6.68 | 80.68474 | 748 |
BnRH-121 | XP_013742020.1 | 5 | 11924 | 14339 | 2415 | Nuclear | 8.86 | 59.29709 | 536 |
BnRH-122 | XP_013742643.1 | 5 | 9817 | 11860 | 2043 | Nuclear | 5.57 | 118.7134 | 1042 |
BnRH-123 | XP_013747521.1 | 5 | 2024226 | 2028422 | 4196 | None | 5.78 | 113.9999 | 1011 |
BnRH-124 | XP_013747522.1 | 5 | 2024226 | 2028422 | 4196 | None | 5.78 | 113.6244 | 1008 |
BnRH-125 | XP_013747524.1 | 4 | 312782 | 314721 | 1939 | Nuclear | 5.7 | 79.90518 | 732 |
BnRH-126 | XP_013749451.1 | 8 | 239870 | 242806 | 2936 | Nuclear | 7.54 | 81.78601 | 718 |
BnRH-127 | XP_013750006.1 | 6 | 267642 | 269831 | 2189 | Nuclear | 5.29 | 55.05872 | 490 |
BnRH-128 | XP_013750644.1 | 5 | 223480 | 225386 | 1906 | None | 8.44 | 83.14401 | 744 |
BnRH-129 | XP_013642191.1 | 7 | 209724 | 211043 | 1319 | None | 5.25 | 123.864 | 1097 |
BnRH-130 | XP_013642261.1 | 5 | 451258 | 452136 | 878 | Nuclear | 5.6 | 125.4121 | 1102 |
BnRH-131 | XP_013642263.1 | 5 | 451258 | 452136 | 878 | Nuclear | 5.63 | 134.0433 | 1172 |
BnRH-132 | XP_013643303.1 | 3 | 341531 | 342724 | 1193 | Nuclear | 9.27 | 67.31187 | 594 |
BnRH-133 | XP_013643558.1 | 4 | 541313 | 545395 | 4082 | None | 7.18 | 136.7354 | 1230 |