Table 1 Overview of the datasets produced by RNA-seq(a leaves, b stems, c roots)
La-1 | -2 | L-3 | S b-1 | -2 | S-3 | R c-1 | R-2 | R-3 | all | |
|---|---|---|---|---|---|---|---|---|---|---|
Total raw reads | 83,579,036 | 764,139,06 | 122,713,724 | 81,388,018 | 84,071,502 | 98,795,482 | 99,973,480 | 75,819,952 | 78,501,126 | 801,256,226 |
Total clean reads | 75,806,512 | 68,952,464 | 109,571,128 | 73,441,140 | 76,130,792 | 89,106,624 | 90,308,382 | 68,347,296 | 70,709,828 | 722,374,166 |
Q20% (%) | 99.24 | 99.20 | 99.27 | 99.23 | 99.24 | 99.26 | 99.20 | 99.24 | 99.20 | |
GC percentage (%) | 46.05 | 46.29 | 46.46 | 97.86 | 97.88 | 97.93 | 46.03 | 45.71 | 46.76 |