| Darkening RIL seed coats | Non-Darkening RIL seed coats | ||||
---|---|---|---|---|---|---|
Early | Intermediate | Mature | Early | Intermediate | Mature | |
Raw reads | 55,936,639 (±5.9%) | 50,956,017 (±4.4%) | 50,662,455 (± 5.4%) | 54,666,751 (± 7.5%) | 52,473,537 (±6.2%) | 54,424,625 (± 6.4%) |
Trimmed reads | 51,875,329 (±5.0%) | 47,244,783 (± 4.4%) | 47,241,601 (± 4.9%) | 50,916,550 (± 7.5%) | 48,876,790 (± 5.9%) | 50,446,588 (± 5.4%) |
Total mappings | 50,185,242 (± 4.8%) | 45,620,314 (± 4.5%) | 45,831,924 (± 4.9%) | 49,381,726 (± 7.5%) | 47,212,581 (± 5.9%) | 48,831,478 (± 5.2%) |
Single mappings | 49,391,395 (± 4.8%) | 45,003,334 (± 4.5%) | 45,174,334 (±4.8%) | 48,592,490 (±7.5%) | 46,573,926 (± 5.9%) | 48,173,184 (± 5.2%) |
Multi mappings | 793,847 (± 4.1%) | 616,980 (± 6.4%) | 657,590 (± 7.7%) | 789,237 (± 6.4%) | 638,656 (±5.7%) | 658,294 (± 5.8%) |
Alignment (%) | 95.3 (± 0.3%) | 95.3 (± 0.2%) | 95.7 (± 0.1%) | 95.5 (±0.2%) | 95.4 (± 0.2%) | 95.6 (± 0.2%) |
Transcripts | 42,715 (±0.7%) | 41,368 (± 0.3%) | 41,077 (± 0.4%) | 42,921 (±0.5%) | 41,400 (± 0.2%) | 40,993 (± 0.2%) |
Gene counts | 27,915 | 27,727 | 27,661 | 27,897 | 27,683 | 27,626 |