Table 1 Newly identified miRNAs in rice.
From: Identification of novel and candidate miRNAs in rice by high throughput sequencing
miRNA_id | miRNA sequence | Length | Location | Number of loci in the rice genome | Frequency in the untreated library | Frequency in the drought-stressed library | Frequency in the salt-stressed library |
|---|---|---|---|---|---|---|---|
Osa-miR167a* | AUCAUGCAUGACAGCCUCAUUU | 22 | intergenic | 1 | 0 | 0 | 1 |
Osa-miR810b.2 | AAGUGAUUUAAUUAUGCCGUU | 21 | intergenic | 1 | 8 | 4 | 0 |
Osa-miR444c.1 | UGCAGUUGUUGUCUCAAGCUU | 21 | antisense to coding gene | 3 | 3 | 0 | 1 |
Osa-miR444c.2 | UGUUGUCUCAAGCUUGCUGCC | 21 | antisense to coding gene | 2 | 3 | 2 | 4 |
Osa-miR444d | UUGUGGCUUUCUUGCAAGUUG | 21 | antisense to coding gene | 1 | 1 | 0 | 0 |
Osa-miR444e | UGCAGUUGCUGCCUCAAGCUU | 21 | antisense to coding gene | 2 | 2 | 0 | 1 |
Osa-miR444f | UGCAGUUGUUGCCUCAAGCUU | 21 | antisense to coding gene | 1 | 3 | 0 | 1 |
Osa-miR1423 | AGCGCCCAAGCGGUAGUUGUC | 21 | intergenic | 1 | 2 | 0 | 1 |
Osa-miR1425 | UAGGAUUCAAUCCUUGCUGCU | 21 | intergenic | 1 | 8 | 0 | 5 |
Osa-miR1427 | UGCGGAACCGUGCGGUGGCGC | 21 | intergenic | 1 | 8 | 1 | 2 |
Osa-miR1428 | CGUUUUGCAAAUUCGCAGGCC | 21 | intergenic | 1 | 2 | 0 | 0 |
Osa-miR1429 | GUUGCACGGGUUUGUAUGUUG | 21 | intergenic | 1 | 1 | 0 | 0 |
Osa-miR1430 | UGGUGAGCCUUCCUGGCUAAG | 21 | intergenic | 1 | 5 | 2 | 4 |
Osa-miR1431 | UUUGCGAGUUGGCCCGCUUGC | 21 | intergenic | 1 | 4 | 3 | Â |
Osa-miR1432 | AUCAGGAGAGAUGACACCGAC | 21 | intergenic | 1 | 15 | 7 | 9 |
Osa-miR1435 | UUUCUUAAGUCAAACUUUUU | 20 | intergenic | 1 | 2 | 0 | 0 |
Osa-miR1436 | ACAUUAUGGGACGGAGGGAGU | 21 | intergenic | 20 | 77 | 24 | 0 |
Osa-miR1437 | UCCGGCGCCGCACUAGGCACUG | 22 | intergenic | 1 | 5 | 3 | 0 |
Osa-miR1438 | AGGGUAAUUUUAUCAUUUUUA | 22 | intergenic | 1 | 2 | 0 | 0 |
Osa-miR1439 | UUUUGGAACGGAGUGAGUAUU | 21 | intergenic | 1 | 0 | 0 | 2 |
Osa-miR1440 | UGCUCAAAUACCACUCUCCU | 20 | intergenic | 2 | 0 | 2 | 0 |
Osa-miR1441 | ACCGGAUGUCGGAAAAGGUUU | 21 | intergenic | 3 | 0 | 24 | 0 |
Osa-miR1442 | AUUCAUAGUACUAGAUGUGU | 20 | intergenic | 2 | 0 | 0 | 5 |