Table 5 Haplotypes based on single nucleotide polymorphisms (SNPs) in the 4-coumarate:CoA ligase 2(4CL2) gene of maize and average phenotypic values of lines included in individual haplotypes. Numbers denote bp position of individual SNPs in the alignment.

s

H_1

A

A

G

G

A

G

T

G

C

A

A

C

AS01, 04, 06, 14, 15, 18, 22, 24

54.9

74.0

56.7

H_2

G

.

.

.

G

.

C

.

T

G

C

.

AS03, 08–11, 17, 19–21, 30, 31, 35, 36

56.6

72.3

55.2

H_3

G

T

.

A

G

T

C

A

.

.

.

.

AS12, 13

57.6

74.7

59.0

H_4

.

.

.

.

.

.

.

.

.

.

.

A

AS02

52.7

74.6

56.2

H_5

G

.

.

.

.

.

.

.

.

.

C

A

AS07, 23, 25, 26

53.2

76.4

59.0

H_6

G

T

.

A

G

T

C

A

.

.

C

A

AS05, 28, 29, 32, 39

57.9

71.9

55.5

H_7

G

.

A

.

G

.

C

.

.

.

.

.

AS40

59.0

73.9

59.1