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Table 4 Haplotypes based on single nucleotide polymorphisms (SNPs) in the 4-coumarate:CoA ligase 1 (4CL1) gene of maize and average phenotypic values of lines included in individual haplotypes. Numbers denote bp position of individual SNPs in the alignment.

From: Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds

 

10

31

35

37

56

182

191

218

431

457

481

502

523

675

718

817

844

911

1119

1154

1236

1260

1284

Lines (Total = 27)

NDF

IVDOM

DNDF

 

s

s

s

s

            

s

s

 

s

 

s

s

    

H_1

C

C

T

C

G

G

G

C

T

T

C

T

C

G

T

C

T

G

G

A

G

C

A

AS02, 04, 15, 17, 18, 21, 23, 24, 36

55.3

73.4

56.1

H_2

.

.

.

.

A

A

C

A

G

C

G

C

T

A

C

G

.

.

C

.

A

.

.

AS03, 06, 08–13, 16, 26–30, 34, 35

56.5

73.2

56.3

H_3

.

.

.

.

.

A

C

A

G

C

G

C

T

A

C

G

.

.

C

.

A

.

.

AS32

58.0

68.5

50.3

H_4

T

T

G

T

.

.

.

.

G

C

G

C

T

.

C

G

C

T

C

G

.

T

C

AS31

63.0

71.0

58.4

  1. NDF: neutral detergent fiber; IVDOM: in vitro digestibility of organic matter; DNDF: digestibility of neutral detergent fiber
  2. s: singleton
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BMC Plant Biology

ISSN: 1471-2229

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