Lutein is needed for efficient chlorophyll triplet quenching in the major LHCII antenna complex of higher plants and effective photoprotection in vivounder strong light
© Dall'Osto et al; licensee BioMed Central Ltd. 2006
Received: 01 August 2006
Accepted: 27 December 2006
Published: 27 December 2006
Lutein is the most abundant xanthophyll in the photosynthetic apparatus of higher plants. It binds to site L1 of all Lhc proteins, whose occupancy is indispensable for protein folding and quenching chlorophyll triplets. Thus, the lack of a visible phenotype in mutants lacking lutein has been surprising.
We have re-assessed the lut2.1 phenotypes through biochemical and spectroscopic methods. Lhc proteins from the lut2.1 mutant compensate the lack of lutein by binding violaxanthin in sites L1 and L2. This substitution reduces the capacity for regulatory mechanisms such as NPQ, reduces antenna size, induces the compensatory synthesis of Antheraxanthin + Zeaxanthin, and prevents the trimerization of LHCII complexes. In vitro reconstitution shows that the lack of lutein per se is sufficient to prevent trimerization. lut2.1 showed a reduced capacity for state I – state II transitions, a selective degradation of Lhcb1 and 2, and a higher level of photodamage in high light and/or low temperature, suggesting that violaxanthin cannot fully restore chlorophyll triplet quenching. In vitro photobleaching experiments and time-resolved spectroscopy of carotenoid triplet formation confirmed this hypothesis. The npq1lut2.1 double mutant, lacking both zeaxanthin and lutein, is highly susceptible to light stress.
Lutein has the specific property of quenching harmful 3Chl* by binding at site L1 of the major LHCII complex and of other Lhc proteins of plants, thus preventing ROS formation. Substitution of lutein by violaxanthin decreases the efficiency of 3Chl* quenching and causes higher ROS yield. The phenotype of lut2.1 mutant in low light is weak only because rescuing mechanisms of photoprotection, namely zeaxanthin synthesis, compensate for the ROS production. We conclude that zeaxanthin is effective in photoprotection of plants lacking lutein due to the multiple effects of zeaxanthin in photoprotection, including ROS scavenging and direct quenching of Chl fluorescence by binding to the L2 allosteric site of Lhc proteins.
The pigment composition of the photosynthetic apparatus of higher plants is extremely well conserved: chloroplast-encoded photosynthetic reaction center complexes bind β-carotene and chlorophyll a, while nuclear-encoded light harvesting proteins bind Chl a, chlorophyll b and the three xanthophylls lutein, violaxanthin and neoxanthin. In addition, plants exposed to excess light conditions synthesize antheraxanthin and zeaxanthin by a two step de-epoxidation of the existing violaxanthin . β-carotene is also bound to the light harvesting complex of Photosystem I . The conservation of carotenoid composition and distribution across a range of plant taxa suggests that each xanthophyll species serves a specific role. However, the reason for the co-existence of different xanthophyll species is not completely clear. In fact, all of the above-mentioned xanthophylls possess similar absorption characteristics in the visible region of the spectrum and are capable of quenching harmful chlorophyll triplets and reactive oxygen species produced during oxygenic photosynthesis . Also, the energy level of the S1 state of different xanthophylls, which is critical for energy transfer from chlorophyll, is very similar both in solution and when bound to Lhc proteins [4, 5]. Although a small fraction of xanthophylls is likely to be free into the thylakoid lipids, where they catalyze ROS scavenging and reduce lipid peroxidation [6, 7], xanthophylls are mainly bound to the Lhc proteins of both PSI and PSII . Recent work, using both recombinant proteins and carotenoid biosynthesis mutants, has suggested that the function of individual xanthophyll species can be understood within the framework of their binding to proteins of the Lhc family . It was shown that the competitive binding of violaxanthin and zeaxanthin to the allosteric site L2 of Lhc proteins controlled the transitions between two conformations with respectively long and short fluorescence lifetime. This change is assumed to contribute to the regulation of light harvesting efficiency and of dissipation of excess light energy (reviewed in ).
Lutein is the most abundant carotenoid in the higher plant photosynthetic apparatus and the only ligand for site L1 in Lhc proteins, whose occupancy is essential for protein folding and the quenching of 3Chl* . Early studies reported isolation of viable lutein-deficient mutants, showing no visible phenotype in laboratory conditions ). Later studies have shown that the lut2 mutant has alterations in NPQ kinetics, antenna size, and reduced LHCII trimer stability . However, none of these studies reported an "in vivo" phenotype corresponding to the observed biochemical lesions and could suggest a specific functional role for lutein wth respect to other xanthophyll species but for a recent report of decreased growth and Fv/Fm upon stress in lut2 . In this manuscript we report on the function of lutein in photosynthesis, through the isolation of a knock-out ε-cyclase mutant of Arabidopsis thaliana, lut2.1, and its characterization through biochemical and physiological methods. Detailed analysis in vivo and purified xanthophyll binding proteins allows individuate specific functional phenotypes, which are consistent with lutein being more efficient in chlorophyll triplet quenching than violaxanthin and suggesting that each xanthophyll species has a specific effect in chloroplast photoprotection.
Pigment composition and photosynthetic functions
In agreement with previous results on lut2 mutant , lut2.1 plants showed similar organ size compared to WT plants, but a slightly lower Chl content per fresh weight and leaf surface. When analyzed for their pigment composition [see Additional file 1] it appeared that the Chl a/b ratio was higher in lut2.1 with respect to WT as was the Chl/Car ratio. Lutein was completely absent from the mutant; a strong compensatory increase of violaxanthin was observed. WT dark-adapted plants did not contain any antheraxanthin or zeaxanthin which were, instead, found in lut2.1 leaves to low, but detectable amounts . When exposed to strong light for 20 min, lut2.1 plants accumulated A+Z to levels approx 3 times higher than WT. In agreement with previous results , the quantum yield of PSII photochemistry (Fv/Fm chlorophyll fluorescence ratio) was not significantly different in lut2.1 with respect to WT. However, we found that the fluorescence quantum yield of Chl in dark-adapted plants was always lower in lut2.1 with respect to WT [see Additional file 2]. This observation suggests that some kind of constitutive thermal dissipation mechanism, resulting in the quenching of chlorophyll fluorescence, is activated in lut2.1 chloroplasts. According to , NPQ was higher in WT with respect to lut2.1 leaves [see Additional file 6]. The two genotypes differ for the initial rate of qE, which is much slower in lut2.1. The PSII antenna size was determined by measuring the half time in the rise of chlorophyll fluorescence in the presence of the photosynthetic electron transport inhibitor DCMU . The half time was 65 ms in WT vs. 81 ms in lut2.1, suggesting that the functional antenna size was 20% smaller in the mutant [see Additional file 2]. These results support suggestions by Lokstein et al.  based on different methods.
State I- State II transitions are impaired in lut2.1
Emerson enhancement of oxygen evolution measured on WT and lut2.1 leaves.
5.7 ± 0.9
28.8 ± 2.8
15.3 ± 3.3
19.1 ± 4.8
Supramolecular organization of pigment binding complexes
Pigment composition of monomeric Lhcb (from WT and lut2.1) and trimeric LHCII (from WT).
WT – band 2
1.8 ± 0.1
3.6 ± 0.1
5.9 ± 0.3
2.3 ± 0.1
10.5 ± 0.4
WT – band 3
1.5 ± 0.1
3.8 ± 0.1
5.9 ± 0.2
1.6 ± 0.1
10.7 ± 0.4
lut2.1 – band 2
1.5 ± 0.1
4.1 ± 0.1
9.8 ± 0.1
10.5 ± 0.1
3.2 ± 0.1
1.1 ± 0.1
We then asked if the lack of lutein and its substitution by violaxanthin in Lhc proteins, per se, was the actual reason for LHCII monomerization in lut2.1. In order to verify this point, we used recombinant Lhcb1 protein, overexpressed in bacteria, for reconstitution with different xanthophyll species plus Chl a and Chl b. Refolded proteins were then separated from free pigment by Ni2+ column chromatography and fractionated by sucrose gradient ultracentrifugation in order to resolve different aggregation states. The results (Figure 1C) indicate that Lhcb1 reconstituted with a mix containing all pigments, as well as the complex with lutein only, did produce trimers. Conversely, if violaxanthin was supplied in the absence of lutein, a violaxanthin-binding complex was obtained which did not produce trimers. For the first time, our measurements show that the binding of lutein per se is sufficient for LHCII trimerization, and that violaxanthin cannot substitute for lutein in this function.
Xanthophyll spectral forms and efficiency of energy transfer to Chl a in LHCII monomeric preparations purified by non-denaturing IEF from WT and lut2.1 thylakoids.
Lutein1 (489 nm)
Lutein2 (495 nm)
Viola1 (492 nm)
Neoxanthin (486.5 nm)
Viola2 (505 nm)
Viola1 (493.5 nm)
Neoxanthin (486.5 nm)
Since, in LHCII monomers from lut2.1, lutein is completely substituted by violaxanthin, we asked if this xanthophyll occupies the same sites L1 and L2 occupied by lutein in the WT. We used for this analysis IEF-purified LHCII proteins, in which the external V1 site is empty . The results are summarized in Table 3. The low amplitude Viola spectral form at site L2 (492 nm)  is maintained in lut2.1 with a 4-fold higher amplitude, meaning that this site is now completely occupied by violaxanthin. A new violaxanthin spectral form, with a similar amplitude and an unusually high red-shift (505 nm) appears at site L1. Neoxanthin spectral forms and energy transfer are instead unaltered in lut2.1 with respect to WT. Both violaxanthin spectral forms in lut2.1 show high efficiency of energy transfer (80–90%) to Chl a. Since energy transfer is strongly influenced by the pigments' mutual distance and orientation, these data strongly suggest that the two violaxanthins occupy, in lut2.1, the L1 and L2 sites. The unusually high red-shift and energy transfer efficiency of Viola at site L1 is probably due by the "unnatural" binding of this pigment at this site, normally occupied by lutein.
Unaltered thermal stability of purified Lhcb proteins binding violaxanthin
In order to identify a possible effect of the altered pigment composition on the stability of Lhc proteins, we measured the heat denaturation dependence of the major CD signal at 492 nm [21, 22] [see Additional file 7]. In band 2 from lut2.1 and WT, two inflection points showing essentially the same values were found, suggesting that both LHCII and minor Lhcb complexes had, on the average, the same stability to heat denaturation, irrespective of whether they bound violaxanthin or lutein. In order to distinguish between the contributions of individual Lhc gene products to the above determination, the band 2 from WT and lut2.1 was fractionated by preparative IEF and the fractions analyzed for polypeptide composition [see Additional file 9]. Fractions containing the same Lhcb apoproteins, as determined by SDS-PAGE, were analyzed for their stability to heat denaturation and their pigment composition [see Additional file 3]. It clearly appeared that not only LHCII, but also other Lhcb proteins folded correctly and showed unaltered stability when violaxanthin was substituted for lutein. The Chl a/b ratio was significantly lower in LHCII isoforms from lut2.1 with respect to WT, while IEF bands with less acidic pI, enriched in minor Lhc proteins, were less affected in their Chl a/b ratio.
Photoprotection and carotenoid triplet formation in lutein vs violaxanthin-binding Lhc proteins
The effect of high light growth conditions
Thylakoid membranes were isolated from low- and high-light grown plants and analyzed by SDS-PAGE (Figure 4B–C). The relative abundance of thylakoid proteins was evaluated by densitometry of Coomassie-stained gels upon identification of individual selected bands by immunoblotting with specific antibodies (not shown). Both WT and lut2.1 thylakoids showed a decrease in the LHCII/PSII ratio in high light, as evaluated by the level of the 33 kDa oxygen evolving complex 1 polypeptide (Figure 4B). WT plants decreased their content in Lhcb1+2 polypeptides upon growth in high light by 15% with respect to control plants while other Lhcb proteins were marginally affected. lut2.1 plants showed a similar effect, but the amplitude of the decrease in LHCII was much higher, suggesting that mutant plants over-react to increasing light by degrading their major antenna complex and thus avoiding photoinhibition (Figure 4C).
In agreement with previous results  the Chl a/b ratio increased in WT and lut2.1 with respect to control conditions, the amplitude of the change being higher in the mutant. lut2.1 had increased Chl a/b ratios even in control conditions. Growth in high light decreased the Chl/Car ratio in WT and lut2.1. WT plants did not contain any A+Z in low light, and low levels in high light conditions. lut2.1 plants contained low, but detectable levels of A+Z in low light conditions , and their increase in high light was 8 times higher than in WT plants. Although the increase in A+Z was the highest, all carotenoid species increased their relative amount with respect to Chls. This effect was stronger in lut2.1 with respect to WT plants [see Additional file 4].
Photooxidation at low temperature
Our results strongly suggest that lut2.1 plants are affected in their capacity to prevent photooxidation of their antenna system, due to the lower efficiency of violaxanthin, with respect to lutein, in quenching 3Chl*. Growth in low temperature conditions should enhance the amplitude of photodamage . We have thus evaluated the effect of growing plants at 4°C at either low (20 μmol m-2 s-1) or high light conditions (800 μmol m-2 s-1). The experiment was performed on WT, lut2.1, npq1 (previously shown to have a decreased resistance to oxidative stress under light stress conditions ) and the double mutant npq1lut2.1. While WT and lut2.1 are able to increase A+Z content at the expense of Viola upon light treatment, npq1 and npq1lut2.1 plants cannot [see Additional file 1].
A complete disruption of the LHCII trimeric organization was observed in the lut2.1 mutant even upon solubilization of thylakoids with the mild detergent α-DM, which is very effective in retaining trimers in WT. Protein gel analyses of purified LHCI and LHCII monomers show that they have unaltered protein composition, and HPLC analyses show that only violaxanthin and neoxanthin are bound to LHCII complexes. Previous work with recombinant proteins has shown that lutein, violaxanthin and zeaxanthin can bind to sites L1 and L2 of Lhc proteins [18, 33] while the site for neoxanthin binding is site N1. This was recently confirmed by X-ray crystallography . We found a novel, red-shifted form of violaxanthin in LHCII from lut2.1, consistent with the red-shift observed for lutein in site L1 of WT LHCII . This strongly suggests that, in lut2.1, violaxanthin replaces lutein in site L1.
LHCII from lut2.1 contains more than one neoxanthin molecule per polypeptide suggesting that this xanthophyll can compete with violaxanthin in either sites L1 or L2. Since reconstitution with neoxanthin only was unable to yield a pigment-protein complex in all Lhc proteins, and occupancy of site L1 was shown to be needed for refolding [9, 34, 35], we conclude that, in LHCII, neoxanthin can compete with violaxanthin for site L2 in the absence of lutein. This is consistent with previous results  obtained in vitro using low stringency reconstitution of recombinant proteins and with the binding of neoxanthin to L2 site in the homologous proteins CP29 and CP26.
LHCII monomerization appears to be due to the lack of lutein in sites L1 and/or L2 per se, as indicated by in vitro reconstitution and trimerization of the Lhcb1 apoprotein. We demonstrated, for the first time, that trimers can only be formed if lutein is present in the reconstitution mixture. Any substitution of lutein with other xanthophyll species leads to monomerization, as shown also for the npq2lut2.1 mutant . Violaxanthin-binding LHCII monomers have the same stability to heat denaturation as lutein-binding monomers, implying that binding of violaxanthin impairs trimerization but not protein stability. Violaxanthin-containing LHCII from lut2.1 is equally efficient in light harvesting, since the small decrease in functional antenna size in lut2.1 is quantitatively consistent with the lower LHCII content determined by biochemical methods.
lut2.1 plants were unable to perform state I – state II transitions. We first considered the possibility that the preferential absorption of far-red light by the PSI-LHCI complex, which is at the basis of state I – state II transitions, could be somehow affected by the absence of lutein. This possibility was ruled out by the observation that, consistent with previous results in Chlamydomonas PSI , the PSI-LHCI complex in sucrose gradient ultracentrifugation was very stable and conserved the red-shifted absorption tail typical of WT complex (data not shown). The loss of state transitions could either be due to the specific loss of a particular LHCII subpopulation able to migrate from grana to stroma membranes  or an impaired capacity for LHCII phosphorylation in the mutant. The first hypothesis is ruled out by the results of non-denaturing IEF analyses showing the presence of the same isoforms in WT and lut2.1. We suggest that LHCII phosphorylation is somehow affected in lut2.1. Phosphorylation experiments are in progress in order to verify this hypothesis. Alternatively, the modified conformation of violaxanthin-binding LHCII might affect the conformational changes , which are involved in detachment from PSII and docking to PSI .
Recent reports have suggested the hypothesis that trimer to monomer transition is the basis of NPQ . Since lut2.1 LHCII is completely monomeric, but still shows residual NPQ, the data contradict this hypothesis. Recent work has shown that NPQ is first elicited in the PSII core complex and is then propagated to the antenna system . Quenching in isolated LHCII has been proposed to be catalyzed by interactions between chlorophyll molecules bound to binding sites A1 and/or A2 with the lutein in site L1, elicited by a conformational change . Thus, the substitution of lutein by violaxanthin in site L1 may limit the efficiency of the process.
WT and lut2.1 plants grow similarly in moderate light conditions according to an early report . In high light, stress effects such as anthocyanin accumulation and bleaching of older leaves were more pronounced in lut2.1 plants. Pigment composition clearly showed that the increase in carotenoids on a Chl basis was stronger in lut2.1 vs. WT. These changes are commonly observed upon exposure to light stress  and correlate with an increased resistance to excess light . Further reactions to excess light consist into a decrease in PSII antenna size  by specific proteolysis of the LHCII complex . Determination of Lhc protein content in thylakoids of WT and lut2.1 plants showed that the amount of LHCII was lower in lut2.1 grown in low light and that further decrease upon exposure to high light was higher in the mutant with respect to WT plants. This is possibly due to the accumulation of zeaxanthin in Lhc complexes, favoring degradation of the major LHCII complex . Thus, the lut2.1 mutant is more sensitive to light than WT and overreacts to an increase in light intensity through the enhanced operation of known mechanisms of photoprotection . The over-operation of these mechanisms likely compensates for the primary lesion brought about by the lack of lutein.
What is the primary effect of the lut2.1 mutation? Previous work with recombinant proteins obtained by reconstituting in vitro Lhc apoproteins with different xanthophylls, has shown that LHCII binding violaxanthin in sites L1 and L2 undergoes a more rapid photobleaching when illuminated in the presence of oxygen with respect to the LHCII binding lutein [9, 18]. Photobleaching is the effect of the 1O2* produced by the reaction of 3Chl* with molecular oxygen, which is a triplet in its ground state. In vivo, 3Chl* is produced by intersystem crossing from 1Chl* and is efficiently quenched by carotenoids, leading to heat dissipation of triplet energy . LHCII purified from lut2.1 is more prone to photobleaching than the complex from WT. Since the fluorescence quantum yield, and thus the 1Chl* concentration on LHCII binding Viola + Zea is essentially the same, we conclude that violaxanthin is less efficient than lutein in quenching 3Chl*, thus resulting in increased 1O2* formation and photobleaching.
The first excited triplet state of carotenoids lies below the energy level of chlorophyll triplet and singlet oxygen. Therefore, the generation of 3Car* can quench 3Chl* and scaveng 1O2*. 3Car* decay into the ground state without emission of radiation, and thus act as safe repositories of excess energy. The increased photobleaching of lut2.1 suggests that, for the same amount of 3Chl*, the relative concentration of 1O2* is increased. This could be due to a decreased formation of 3Car*. As 3Car* decay is very fast (~2 μs) we addressed this question by flash-induced, time-resolved spectroscopy. Violaxanthin triplets exhibit an extinction coefficient (from 3·105 to 6·105 at 490 nm) larger than lutein (about 2·105 at 500 nm) . Despite this difference, after normalization for the *Chl signal, we observed that absorbance changes due to lutein triplet formation were 1.5-fold larger than for violaxanthin, and the kinetics for triplet formation were faster for lutein. This proves that lutein bound to LHCII proteins is more efficient as a 3Chl* quencher than violaxanthin.
The binding site responsible for the increased 1O2* production is, likely, site L1, since the non-occupancy of site L2 did not significantly affect photobleaching in recombinant LHCII [9, 18]. It is possible that the different conformation of LHCII protein binding violaxanthin modify the Chl-to-xanthophyll distance, which is crucial for triplet quenching . This effect is independent from the stability of LHCII protein folding as assessed by thermal denaturation, but is dependent on the aggregation size of the complex, implying that trimerization increases the "special" Chl to carotenoid interaction responsible for optimal photoprotection. This hypothesis is supported by the report that monomerization of LHCII yields into the loss of a specific red-shifted (510 nm) spectral form of lutein .
Thus, the primary lesion in lut2.1 mutation is the enhanced production of singlet oxygen in the major PSII antenna complex, partially compensated by increased zeaxanthin production. In order to verify this hypothesis, we have studied the behavior, under enhanced stress conditions (high light + low temperature), of the lut2.1 mutant compared to the double mutant npq1lut2.1, which cannot synthesize zeaxanthin upon exposure to excess light. Zeaxanthin free in the membrane, upon release of violaxanthin from LHCII and de-epoxidation by VDE, has been suggested to protect from photooxidation, by a ROS scavenging effect [6, 30] that supplements the action of vitamin E . A previous paper  reported phenotipic evidences of a higher sensitivity of double mutant npq1lut2 to photoxidative stress. We performed a detailed description of this genotype, showing both its behaviou during short high-light treatment, and acclimation to long-term stress. The npq1lut2.1 plants underwent stronger photoinhibition, anthocyanin biosynthesis and lipid oxidation not only with respect to WT but also with respect to both npq1 and lut2.1 single mutants. Our results Thus point to a strong photosensitive phenotype in higher plant mutant due to to lack of both lutein and zeaxanthin; such data are in agreement with those obtained in C. reinhardtii npq1lor1 mutant . In contrast, a recent publication  failed to evidence a synergistic effect of lutein and zeaxanthin in promoting growth and preventing stress; these results could be ascribed to the different setting of stress conditions used with respect to our work. Our data, in agreement with  and , let to conclude that zeaxanthin is effective in photoprotection of plants lacking lutein. This is due to the multiple effects of zeaxanthin in photoprotection, including ROS scavenging [6, 30, 53] and direct quenching of Chl fluorescence by binding to the L2 allosteric site of Lhc proteins .
The conservation of carotenoid composition across the plant kingdom implies a specific function for each xanthophyll species. Lutein has the specific property of quenching harmful 3Chl* by binding at site L1 of the major LHCII complex and of other Lhc proteins of plants, thus preventing ROS formation. Substitution of lutein by violaxanthin decreases the efficiency of 3Chl* quenching and causes higher ROS yield. The phenotype of lut2.1 mutant in low light is weak only because rescuing mechanisms of photoprotection, namely zeaxanthin synthesis, compensate for the ROS production, as also supported from the lower antenna size observed in low light. Thus, the light sensitive phenotype becomes evident in conditions enhancing photooxidative stress or when the additional mechanisms are eliminated by the npq1 mutation. Excess light and low temperature are commonly experienced by plants during their lifecycle. Therefore, performing photosynthesis without lutein is like driving without a seat belt. At low speed, one can get away with it as additional protective mechanisms (airbags = zeaxanthin) partially compensate for the damage. But, in stress conditions, the additional mechanisms fail and the damage becames evident.
The specificity of site L1 for lutein in all Lhc proteins  probably derives from the co-evolution of the carotenoid biosynthesis pathway and Lhc proteins with multiple binding sites dedicated to different functions. Lutein is the only xanthophyll containing one beta and one epsilon ring. Beta and epsilon carotenoid cyclases have diverged early during plant evolution, and are both found in all higher plant taxa, as well as in green algae like Scenedesmus or Chlamydomonas . In most plants, lutein is not undergoing epoxidation-deepoxidation reactions in response to environmental conditions, while the beta-beta xanthophylls do. Since site L1 is dedicated to the essential function of Chl triplet quenching, it may be desirable, for the plant, that the chromophore catalyzing this function is not involved in rapid concentration changes in response to environmental conditions as happens for the beta-beta xanthophylls involved in the xanthophyll cycle .
We analyzed 20000 independent T-DNA insertion lines of Arabidopsis thaliana (accession Wassilewskija-2) available from the Institut National de la Recherche Agronomique (INRA, Versailles, France). Four hundred seed pools, each representing one row or one column of the grid (100 lines), were prepared and then combined into 80 superpools, each representing 500 lines.
The presence of T-DNA insertion in the lycopene ε-cyclase gene (lyec) was assessed by PCR amplification on DNA from each of the superpools, followed by a nested PCR. The first (10 cycles: 94° 2'; 65°-1°/cycle 30"; 72° 2'. 35 cycles: 94° 15"; 55° 30"; 72° 1') was performed by using the lyec specific primers 5'-AGTTAGTCGACGTTTGCTCCATG-3' and 5'-CAATGGTAATAGGCTTGTCATC-3' and the T-DNA specific primers 5'-CTACAAATTGCCTTTTCTTATCGA-3' and 5'-CTGATACCAGACGTTGCCCGCATAA-3' The nested PCR (35 cycles: 94° 45"; 56° 45"; 72° 1') was performed by using the lyec specific primers 5'-GAGGAGGTAAAGTATGGTTCCAC-3' and 5'-CTCTCTCCAAACATGCTCAATAC-3' and the T-DNA specific primers 5'-CATGTACATCAAGCTTATCGATAC-3' and 5'-TACGAATATCTGCATCGGCGAAC-3'. One mutant line, containing a T-DNA insertion in the sixth exon of the gene, was identified in the superpools and then in the pools, and kindly provided by INRA. To identify homozygous lines, PCR analyses was performed using primers 5'-AAGCTTCTTCCGTACTTTC-3' and 5'-CAATCGTAAACAATATAAGCG-3', flanking the site of insertion, and the T-DNA specific primer 5'-CATGTACATCAAGCTTATCGATAC-3'. This mutant will be indicated as lut2.1 in order to avoid confusion with the original lut2 mutant  solely to indicate that it is made in Wassilewskija ecotype. After completion of this work we have obtained the same mutation in Columbia ecotype and verified that it showed the same behaviour as the lut2.1 with respect to sensitivity to light stress.
WT plants of Arabidopsis thaliana ecotype Wassilewskija and mutants npq1 , were obtained from the Arabidopsis Stock center. Genotype npq1 lut2.1 was obtained by crossing single mutant plants. Plants were grown for three weeks in controlled conditions (~120 μmol m-2 s-1, 21°C, 8 h light/16 h dark). For long term treatment, 3 weeks old seedlings were exposed (a) to light conditions of 120 or 1400 μmol m-2 s-1 for 3 weeks at 21°C, and (b) to light conditions of 20 or 800 μmol m-2 s-1 for 3 weeks at 4°C. Short-term high light treatment was performed for 20 minutes at 1200 μmol m-2 s-1.
Chlorophyll fluorescence and photosynthetic oxygen evolution in vivo
Chlorophyll fluorescence from intact leaves or from leaf discs was measured with a PAM-2000 fluorimeter (Walz), as previously described . The maximal quantum yield of PSII photochemistry was measured in dark-adapted leaves from the maximal fluorescence level (Fm) and the initial level (Fo): (Fm-Fo)/Fm = Fv/Fm. Variable fluorescence was induced in leaf discs, infiltrated with DCMU 2.5 10-5 M, with a red light of 8 μmol m-2 s-1 produced by a light emitting diode. The half-time of the fluorescence rise was taken as a measure of the functional antenna size of PSII . Photosynthetic O2 evolution was measured with the photoacoustic method, as described by Havaux et al.,  (for a review, see ). The Emerson enhancement (E) of O2 evolution was determined in state I or in state II by adding a continuous far-red light (>715 nm, 34 W m-2) to the modulated blue-green light (obtained with a BG38 Schott filter; photon flux density 24 μmol m-2 s-1). E (%) = [(Φ (+FR) - Φ (-FR))/Φ (-FR)] × 100, where Φ (+FR) is the amplitude of oxygen evolution signal in the presence of the far-red light and Φ (-FR) is the signal measured with the modulated exciting light only. State II was reached by illuminating leaves with blue-green light for 10 min, and state I was obtained after 10-min illumination with far-red light.
Non-photochemical quenching of chlorophyll fluorescence was measured with a PAM 101–103 fluorimeter (Walz). NPQ was calculated according to the following equation : NPQ = (Fm-F'm)/F'm, where Fm is the maximum Chl fluorescence from dark-adapted leaves and F'm the maximum Chl fluorescence under actinic light exposition.
Thylakoid isolation and sample preparation
Unstacked thylakoid membranes were isolated from dark-adapted leaves as previously described .
Membranes corresponding to 500 μg of chlorophylls were washed with 5 mM EDTA and then solubilized in 1 ml with 0.6% α-DM, 10 mM HEPES pH 7.5. Solubilized samples were then fractionated by ultracentrifugation in a 0.1–1 M sucrose gradient containing 0.06% α-DM, 10 mM HEPES pH 7.5 (22 h at 280,000 × g, 4°C).
Monomeric Lhcb proteins were further fractionated by flat-bed isoelectric focusing at 4°C as previously described .
The pigments were extracted either from whole leaves, thylakoid membranes and isolated antenna complexes with 80% acetone, then separated and quantified by HPLC  and by fitting of the spectrum of the acetone extract with the spectra of individual pigments .
SDS-PAGE analyses was performed with the Tris-Tricine buffer system as previously described . Gel images were acquired using a Bio-Rad GS710 scanner. The picture was then analysed with GEL-PRO ANALYZER software (Media Cybernetics Inc., MD, USA) that quantifies the staining of the bands as IOD (optical density integrated on the area of the band).
In vitro reconstitution of LHCII pigments complexes and trimerization assay
The construct over-expressing Lhcb1 was obtained as described , except for a sequence coding for a His6 tail inserted at the 3' end before stop codon. In vitro reconstitution of LHCII with altered xanthophyll composition was performed as previously described . Purification of reconstituted holocomplexes was performed by a Ni2+ chelating column (Pharmacia Source 15S) as described . Reconstitutions were accomplished with a mix of xanthophylls as follow: LHCII Viola, 100% violaxanthin; LHCII Lute, 100% lutein; the Chl a/b ration in the mixture was 2.3. In order to perform in vitro trimerization of reconstituted complexes, we followed a method previously described  with some modifications. Ni2+ column and bound reconstituted LHCII were washed with trimerization buffer: 0.1 mg/ml PG, 0.06% β-DM, 0.2 M NaCl, 20 mM phosphate buffer pH 7.5, 10 mM imidazole. Pigment-protein complexes were collected by washing column with eluting buffer: 0.5 M imidazole, 20 mM phosphate buffer pH 7.5, 0.2 M NaCl, 0.06% β-DM; LHCII trimers were separated from monomers by sucrose gradient ultracentrifugation .
Steady state spectra were obtained using samples in 10 mM HEPES pH 7.5, 0.06% α-DM, 0.2 M sucrose. Absorption measurements were performed using a SLM-Aminco DW-2000 spectrophotometer at RT.
Time-resolved spectroscopy: absorbance changes were monitored with a home-built pump and probe laser spectrophotometer, basically described in , and modified as follows. The wavelength of monochromatic 10-ns light pulses used for the detection of absorbance changes is tuned from 410 nm to 590 nm by an optical parametric oscillator pumped by the third harmonic of a Nd:YAG laser (Surelite, Continuum). The 10-ns excitation flash is provided by a home-built broadband dye laser cell filled with DCM in methanol (650 nm) and pumped by the second harmonic of a Nd:YAG laser (Minilite, Continuum). The delay between the pump and probe pulses is adjusted with a 100 MHz National Instruments PCI-6552 digital waveform generator. Detection beam is split in two ahead of measure and reference 10 × 10 mm cuvettes. Transmitted light is filtered through a combination of 6 mm-thick BG39 colored Schott filter and CVI low-pass dielectric filter (600 nm). Light intensity is measured with large area silicon photodiodes fitted to AC-coupled preamplifiers. The difference between measure and reference analog signals is achieved by a Tektronix differential amplifier (gain 10). Acquisition of difference and reference signals is performed via a 16-bit National Instrument digitizer PCI-6052E. Optical density of the sample was adjusted to 1 in the Qy band of chlorophylls. The flash-induced signal exhibits negative peaks around 430 nm, characteristic of the bleaching of the carotenoid S2←S0 transitions, and a strong positive peak around 510 nm attributed to the carotenoid T2←T1 transition. The spectra are thus denoted triplet-minus-singlet difference absorption spectra. The extent of the carotenoid absorbance change at 5 μs is approximately the same at 440 nm and 460 nm. This led to the choice of these two wavelengths as isosbestic points of the carotenoid TmS spectrum. At 2.5 ns, a contribution of excited chlorophyll (Chl*) could be detected within the time-resolution of the instrument, contributing negatively at 440 nm and positively at 460 nm. Consequently, the kinetics of pure Chl* decay have been symbolized by the difference at these two wavelengths (Figure 3, panels B and D). This deconvolution procedure is validated by the fact that the Chl* signal decays to zero within 200 ns and stays stable until the end of the kinetics, i.e. 5 μs. This procedure also allowed us to normalize the data on the 440–460 signal at 2.5 ns, so as to compare the relative formations of 3Car* in either lutein- or violaxanthin reconstituted proteins. Kinetic data were fitted to a biexponential model (solid symbols in Figure 3B,D).
Protein thermal stability
This was analyzed as described  by following the decrease of the 492 nm CD signal detected by a Jasco 600 spectropolarimeter at increasing temperatures, from 20 to 80°C (scan rate 1°C/minute and step 0.2°C). Protein thermal stability was measured as denaturation T°1/2, determined by inflection point of CD denaturation curves.
The kinetics of antennae photobleaching was measured as described  but with a higher light intensity of ca 6000 μmol m-2s-1 and sample cooling at 10°C. Initial and maximal absorbance was 0.6.
Determination of the sensitivity to photoxidative stress
Photoxidative stress was induced in whole plants by a strong light treatment at low temperature. Whole Arabidopsis plants were exposed to high light (1100 μmol photon m-2 s-1 with a photoperiod of 8 h) at low temperature (7°C/8°C, day/night air temperature), as described previously .
Photoinhibition of PSII was measured by chlorophyll fluorometry (Fv/Fm ratio) with a PAM-2000 fluorimeter (Walz). Photoxidative stress was measured by thermoluminometry with a custom-made apparatus that has been described . The amplitude of the TL peak at 135°C was used as an index of lipid peroxidation.
List of abbreviations
chlorophyll excited singlet state
chlorophyll excited triplet state
carotenoid excited triplet state
major light harvetsing complex of photosystem II
- PSII (I):
photosystem II (I)
ΔpH-dependent portion of non-photochemical quenching
reactive oxygen species
We like to thank R. Croce (Trento, Italy) for help in deconvolution analyses of isolated LHCII and S. Cazzaniga (Verona, Italy) for technical support. This work was supported by FIRB RBLA0345SF_002 and GENEFUN (functional genetic) program.
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