Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana

BMC Plant Biology

Table 2 Synteny

Synteny Block	Reference species	Homoeolog	Syntenic Species	Homoeolog	Synteny (% genes)	Synteny (# of genes)	Total Genes¹	Synteny (% confirmed genes)	Synteny (# of confirmed genes)	Total Confirmed Genes¹
1a	Soybean		M. truncatula		37%	7	19	43%	6	14
1a	M. truncatula		Soybean		44%	7	16	50%	6	12
1a	Soybean		A. thaliana		20%	4	20
1a	M. truncatula		A. thaliana		29%	5	17
1a	A. thaliana		Soybean		50%	4	8
1a	A. thaliana		M. truncatula		50%	5	10
1b	Soybean		M. truncatula		75%	33	44	94%	33	35
1b	M. truncatula		Soybean		59%	33	56	79%	33	42
1b	Soybean		A. thaliana	Composite At2_1i-At3_1iv	62%	28	45
				At2_1i	34%	14	41
				At5_1ii	25%	11	44
				At3_1iii	25%	10	40
				At3_1iv	23%	7	30
1b	M. truncatula		A. thaliana	Composite At2_1i-At3_1iv	50%	28	56
				At2_1i	27%	13	48
				At5_1ii	21%	12	56
				At3_1iii	17%	9	52
				At3_1iv	24%	8	33
2	Soybean		M. truncatula	Mt_2i	60%	28	47	66%	27	41
2	M. truncatula	Mt_2i	Soybean		60%	28	47	72%	26	36
2	Soybean		M. truncatula	Mt_2ii	32%	12	38	33%	12	36
2	M. truncatula	Mt_2ii	Soybean		24%	12	50	26%	12	46
2	Soybean		M. truncatula	Composite Mt_2i, Mt_2ii	66%	31	47	73%	30	41
2	Soybean		A. thaliana	Composite	31%	20	64
2	Soybean		A. thaliana	At4_2i	29%	16	56
2	Soybean		A. thaliana	At3_2ii²	17%	11	64
2	M. truncatula	Mt_2i	A. thaliana	Composite At4_2i, At3_2ii	26%	12	47
2	M. truncatula	Mt_2i	A. thaliana	At4_2i	23%	11	47
2	M. truncatula	Mt_2i	A. thaliana	At3_2ii	27%	6	22
2	M. truncatula	Mt_2ii	A. thaliana	Composite At4_2i, At3_2ii	37%	15	41
2	M. truncatula	Mt_2ii	A. thaliana	At4_2i	32%	13	41
2	M. truncatula	Mt_2ii	A. thaliana	At3_2ii	22%	8	36

ISSN: 1471-2229