Table 1 Fifty A. thaliana gene families Gene family names or typical gene annotations are given in the first column. The second column contains abbreviated names or mnemonics for the families. Unnamed gene families are given PIR family numbers (e.g. HypProt131). The third column indicates the number of predicted gene sequences included in final A. thaliana gene family phylogenies.
Annotation | Short Name | Seqs |
|---|---|---|
calcineurin-like phosphoesterase | CalcinPEst | 19 |
calmodulin | Calmod | 79 |
cation/hydrogen exchanger | CatHydExch | 28 |
chlorophyll a/b-binding | ChlABBP | 21 |
cysteine proteinase | CystProt | 31 |
cytochrome P450 | CytP450 | 225 |
Enod16 | Enod16 | 32 |
Enod18/ER6 protein | Enod18_ER6 | 29 |
exocyst subunit EXO70 | ExocystEX070 | 23 |
expansin | Expansin | 34 |
FAD-linked oxidoreductase | FADOxidor | 27 |
flavin-containing monooxygenase | FlavMonoOx | 28 |
germin-like | Germin | 30 |
glutathione transferase; dehydroascorbate reductase | GlutTnsfs | 50 |
glycosyl hydrolase family 1 | GlycosHdls | 47 |
glycosyltransferase family 8 | GlyTnsf8 | 24 |
glycosyl hydrolase family 9 | GlyTnsf9 | 25 |
auxin-independent growth promoter | GrthRegul | 33 |
GDSL-motif lipase/hydrolase | GSDLLipase | 97 |
GTP-binding; Ras-related GTP-binding | GTPBP | 72 |
acyltransferase | HBenzTnsfs | 57 |
heat shock transcription factor | HtShkTncFct | 20 |
hypothetical | HypProt131 | 28 |
hypothetical; esterase-like | HypProt2752 | 23 |
hypothetical | HypProt317 | 42 |
hypothetical | HypProt536 | 25 |
hypothetical | HypProt688 | 21 |
lysine/histidine transporter; amino acid permease | KHTnsptr | 22 |
major intrinsic protein (MIP) family | MajIntrinsProt | 38 |
MATE | MATE | 50 |
mitochondrial carrier | MCP | 57 |
MFS | MFS | 68 |
major latex protein (MLP)-related; Bet v I allergen | MLP | 25 |
MYB transcription factor | MYB | 120 |
NBS-LRR disease resistance | NBSLRR | 152 |
oxidoreductase; 20G-Fe(II) oxygenase | Oxidored | 95 |
pathogenesis-related protein 1 | PathRelPr1 | 22 |
phosphoprotein phosphatase; ser/thr phosphatase | PhosphPtase | 26 |
phototropic response protein | PhotResp | 30 |
phosphatidylinositol/phophatidylcholine transfer prot. | PIPCTP | 30 |
plastocyanin-like domain; blue copper p.; Enod 20 | PlastocEn20 | 37 |
polygalacturonase | Polygalns | 65 |
oligopeptide transport | POT | 48 |
proteasome alpha and beta subunits | PsomeAB | 23 |
short-chain dehydrogenase/reductase | SCDehydRed | 84 |
subtilisin-like serine protease | SubtilisinSP | 53 |
thaumatin-like | Thaumatin | 22 |
UDP-glycosyltransferase | UDPGlycTnsf | 109 |
WRKY transcription factor | WRKY | 55 |
xyloglucan endotransglycosylase | XyloTGlyc | 33 |