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Table 4 Categories of expression changes between the wild type and K833A under ER stress condition (representative 10 genes, respectively)

From: RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions

RAP ID

FPKM

Fold change

FDR

FPKM

Fold change

FDR

WT

K833A

DMSO

TM

DMSO

TM

  

Expression changes were little influenced by K833A *1

 Os01g0837000

9.08

18.38

2.03

0.00859618

12.09

25.78

2.13

0.000020584

 Os03g0300400

109.61

183.59

1.67

0.0467696

186.45

305.11

1.64

0.0134221

 Os03g0187800

7.05

15.94

2.26

0.00948828

19.90

50.20

2.52

4.20687E-08

 Os05g0427400

29.33

55.84

1.90

0.0300822

77.44

146.93

1.90

0.00251439

 Os06g0586000

29.61

66.60

2.25

0.0395364

77.79

164.57

2.12

0.000156006

 Os07g0182100

64.47

122.61

1.90

0.00326075

167.04

277.44

1.66

0.023173

 Os08g0135900

33.96

65.11

1.92

0.0453252

90.63

164.43

1.81

0.0696732

 Os09g0412300

9.26

21.71

2.34

0.0443049

12.18

30.56

2.51

0.000226511

 Os09g0571200

25.91

56.86

2.19

0.00289657

51.23

103.80

2.03

0.0000892

 Os11g0149400

82.59

150.16

1.82

0.02882

113.98

177.32

1.56

0.0892376

Expression changes were moderately infuluenced by K833A *2

 Os02g0710900

29.26

116.88

3.99

3.45959E-08

31.38

69.09

2.20 0.00549388

 

 Os02g0115900

138.92

710.21

5.11

0

189.82

443.48

2.34

0.00122459

 Os03g0832200

12.19

162.1

13.30

0

9.77

49.78

5.10

0

 Os05g0187800

51.68

297.53

5.76

0

62.5

152.53

2.44

1.1548E-07

 Os06g0593100

46.55

343.21

7.37

0

61.77

254.62

4.12

0

 Os06g0622700

27.89

237.66

8.52

0

48.45

172.85

3.57

0

 Os07g0593400

2.94

33.29

11.32

3.71682E-06

2.57

7.65

2.98

0.115152

 Os08g0440500

29.9

117.73

3.94

3.45443E-11

36.2

73.04

2.02

0.00135378

 Os08g0155900

21.56

81.04

3.76

2.14632E-06

25.68

43.3

1.69

0.192226

 Os09g0451500

81.98

562.21

6.86

0

94.77

261.31

2.76

5.00997E-11

Expression changes were drastically infuluenced by K833A *3

 Os01g0947000

10.91

30.5

2.80

3.55683E-06

12.06

13.49

1.12

0.999987

 Os03g0710500

1.03

16.95

16.46

0.000805324

1.012

1.016

1.00

1

 Os03g0733800

18.07

101.2

5.60

0

24.18

37.53

1.55

0.219289

 Os04g0670500

1.17

8.59

7.34

2.30013E-05

1.09

1.49

1.37

1

 Os05g0591400

1.08

12.32

11.41

0.000529672

1.017

1.023

1.01

1

 Os05g0428600

1.097

94.81

86.43

0

1.018

1.3

1.28

1

 Os06g0139800

7.87

20.91

2.66

0.00237693

9.14

10.42

1.14

0.999987

 Os06g0212900

1.45

8.28

5.71

3.75258E-05

1.29

1.35

1.05

1

 Os07g0123900

88.78

196.86

2.22

5.81855E-05

66.84

75.68

1.13

0.999987

 Os12g0568500

77.5

283.8

3.66

2.3146E-10

28.7

25.71

0.90

0.999987

  1. *1 These genes are exclusively controlled by OsbZIP39, OsbZiP60 and/or unknown factor (not controlled by OsIRE1), namely, these genes showed little effect of K833A mutant on gene expression under the ER stress condition. Thus fold change between wt vs. wt with DTT and K833A vs. K833A with DTT showed similar in ‘little’ category genes.
  2. *2 These genes are controlled by not only OsbZiP39, OsbZiP60 and/or unknown factor but also OsIRE1 because these gene expressions are induced by TM treatment in even K833A plant but their expression levels are lower than wild type with TM treatment.
  3. *3 These genes are exclusively controlled by OsIRE1 pathway when ER stress is occurred because these gene expressions are little induced by TM treatment in K833A plant but their expression levels are increased in wild type with TM treatment.
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BMC Plant Biology

ISSN: 1471-2229

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