Table 3 Insertion positions and names of the 71 genes harboring BRAMI -1 elements in intronic regions and list of their orthologous genes in Arabidopsis and NIPs in the triplicated blocks of the B. rapa genome
From: Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome
| Â | MITE No | Chr No | MITE start | MITE end | Ortholog from A. thaliana | Triplicated blocks in B. rapaz | ||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Â | LF | MF1 | MF2 |
THREE COPY GENES | 23 | A01 | 8110084 | 8109821 | At4g25050 | Bra013859 | Bra019193 | Bra010475 |
| Â | 83 | A02 | 4177719 | 4177456 | At5g17300 | Bra008563 | Bra006394 | Bra023610 |
| Â | 176 | A03 | 5778627 | 5778365 | At5g55050 | Bra002937 | Bra035549 | Bra028994 |
| Â | 188 | A03 | 8910390 | 8910639 | At2g37940 | Bra005148 | Bra017148 | Bra000029 |
| Â | 219 | A03 | 17370042 | 17370087 | At3g15820 | Bra027205 | Bra021138 | Bra001607 |
| Â | 220 | A03 | 17370087 | 17370331 | At3g15820 | Bra027205 | Bra021138 | Bra001607 |
| Â | 299 | A04 | 13405505 | 13405756 | At2g30110 | Bra018338 | Bra021611 | Bra022779 |
| Â | 303 | A04 | 14136797 | 14136887 | At2g31500 | Bra018236 | Bra021727 | Bra022844 |
| Â | 346 | A05 | 7674854 | 7674713 | At2g29980 | Bra018348 | Bra021599 | Bra022767 |
| Â | 347 | A05 | 7674974 | 7675006 | At2g29980 | Bra018348 | Bra021599 | Bra022767 |
| Â | 349 | A05 | 8733844 | 8733992 | At4g04640 | Bra029511 | Bra000802 | Bra018503 |
| Â | 368 | A05 | 16917820 | 16918070 | At3g20770 | Bra035746 | Bra023927 | Bra001802 |
| Â | 425 | A06 | 14973843 | 14973752 | At5g64740 | Bra024324 | Bra037793 | Bra031904 |
| Â | 443 | A06 | 22195786 | 22196049 | At3g28050 | Bra025321 | Bra033037 | Bra039062 |
| Â | 450 | A06 | 24123977 | 24123793 | At2g01430 | Bra024888 | Bra026666 | Bra017451 |
| Â | 452 | A06 | 24666391 | 24666142 | At5g46630 | Bra025009 | Bra022052 | Bra017537 |
| Â | 473 | A07 | 8537339 | 8537527 | At1g22340 | Bra031388 | Bra012324 | Bra016424 |
| Â | 474 | A07 | 9114152 | 9114414 | At1g20670 | Bra025837 | Bra012243 | Bra016456 |
| Â | 566 | A08 | 20712404 | 20712596 | At1g07920 | Bra018669 | Bra031602 | Bra030707 |
| Â | 654 | A10 | 1570075 | 1569913 | At1g06080 | Bra015473 | Bra032437 | Bra030638 |
TWO COPY GENES | 46 | A01 | 18882651 | 18882770 | At5g52140 | Bra028293 | Bra022579 | - |
| Â | 55 | A01 | 23626196 | 23626459 | At3g16180 | Bra027185 | Bra021168 | - |
| Â | 61 | A01 | 25069244 | 25069502 | At3g02180 | - | Bra021476 | Bra001035 |
| Â | 87 | A02 | 5079784 | 5080047 | At5g20540 | - | Bra006563 | Bra020109 |
| Â | 113 | A02 | 9852697 | 9852644 | At1g66370 | Bra004162 | Bra039763 | - |
| Â | 153 | A02 | 25486260 | 25486523 | At5g23940 | Bra009716 | - | Bra029388 |
| Â | 168 | A03 | 2298612 | 2298349 | At5g12420 | - | Bra006160 | Bra023377 |
| Â | 200 | A03 | 11193078 | 11192830 | At2g47460 | Bra004456 | - | Bra000453 |
| Â | 234 | A03 | 20936196 | 20936267 | At5g23260 | Bra013028 | Bra026507 | Bra029365 |
| Â | 235 | A03 | 20936271 | 20936494 | At5g23260 | Bra013028 | Bra026507 | Bra029365 |
| Â | 249 | A03 | 24785451 | 24785715 | At4g22950 | - | Bra019343 | Bra020826 |
| Â | 319 | A04 | 18584148 | 18584406 | At2g45550 | Bra004921 | Bra039330 | - |
| Â | 444 | A06 | 22352521 | 22352784 | At3g27640 | Bra025293 | - | Bra039073 |
| Â | 460 | A07 | 1577014 | 1576769 | At2g18230 | Bra039627 | - | Bra037229 |
| Â | 467 | A07 | 6402416 | 6402153 | At1g29120 | - | Bra030121 | Bra010851 |
| Â | 490 | A07 | 12392864 | 12392917 | At3g57530 | Bra007334 | - | Bra003287 |
| Â | 536 | A08 | 12108300 | 12108552 | At4g35150 | - | Bra017699 | Bra034678 |
| Â | 545 | A08 | 15271728 | 15271631 | At4g36760 | Bra011704 | - | Bra010574 |
| Â | 596 | A09 | 8214071 | 8213980 | At1g61890 | Bra027073 | Bra028379 | - |
| Â | 597 | A09 | 8214185 | 8214078 | At1g61890 | Bra027073 | Bra028379 | - |
| Â | 604 | A09 | 16501688 | 16501868 | At5g46350 | Bra025021 | Bra022033 | Bra017561 |
| Â | 605 | A09 | 16667316 | 16667053 | At5g46040 | - | Bra022016 | Bra017582 |
| Â | 606 | A09 | 16682960 | 16683223 | At5g46040 | - | Bra022016 | Bra017582 |
| Â | 608 | A09 | 19871591 | 19871427 | At1g32780 | Bra023290 | Bra010185 | - |
| Â | 615 | A09 | 24192808 | 24192545 | At1g23380 | Bra024593 | - | Bra016348 |
| Â | 666 | A10 | 8067999 | 8067852 | At5g57655 | Bra002710 | Bra020426 | - |
| Â | 670 | A10 | 8789727 | 8789464 | At5g59340 | Bra002576 | Bra020321 | - |
ONE COPY GENES | 40 | A01 | 14766344 | 14766081 | - | - | - | Bra029909 |
| Â | 41 | A01 | 14767003 | 14766741 | - | - | - | Bra029909 |
| Â | 129 | A02 | 16530545 | 16530808 | At4g01590 | - | - | Bra008554 |
| Â | 178 | A03 | 5992774 | 5992961 | - | - | - | Bra029035 |
| Â | 223 | A03 | 18448338 | 18448491 | At3g20360 | - | - | Bra001785 |
| Â | 578 | A09 | 3996947 | 3996684 | At2g11810 | - | - | Bra037199 |
| Â | 266 | A03 | 29733949 | 29734212 | - | - | Bra017680 | - |
| Â | 268 | A03 | 30599723 | 30599787 | At4g36940 | - | Bra017808 | - |
| Â | 472 | A07 | 7616363 | 7616100 | - | - | Bra012436 | - |
| Â | 49 | A01 | 21397784 | 21397864 | At3g19870 | - | Bra038237 | - |
| Â | 120 | A02 | 12485621 | 12485884 | At1g72110 | - | Bra008008 | - |
| Â | 128 | A02 | 15935110 | 15935361 | At1g80200 | - | Bra008487 | - |
| Â | 148 | A02 | 24005490 | 24005690 | - | - | Bra020642 | - |
| Â | 285 | A04 | 7140471 | 7140542 | - | Bra028251 | - | - |
| Â | 378 | A05 | 20048141 | 20048392 | - | Bra027271 | - | - |
| Â | 445 | A06 | 22716443 | 22716194 | At3g26610 | Bra025216 | - | - |
| Â | 501 | A07 | 16958538 | 16958801 | At1g65590 | Bra004121 | - | - |
| Â | 513 | A07 | 20340243 | 20340188 | At1g74790 | Bra015893 | - | - |
| Â | 655 | A10 | 4270200 | 4270396 | At1g02390 | Bra033323 | - | - |
| Â | 656 | A10 | 4270415 | 4270484 | At1g02390 | Bra033323 | - | - |
| Â | 657 | A10 | 4410198 | 4410053 | - | Bra033297 | - | - |
| Â | 672 | A10 | 9364412 | 9364675 | - | Bra002467 | - | - |
| Â | 673 | A10 | 9364744 | 9365007 | - | Bra002467 | - | - |
| Â | 677 | A10 | 10858935 | 10858966 | - | Bra002214 | - | - |