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Table 1 Summary of observed and predicted copy numbers of the BRAMI- 1 elements in Brassica relatives

From: Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome

MITE

BRAMI-1

ATTIRTA-1

 

B. oleracea

B. rapa

B. napus

A. thaliana

Database type

GSS

Pseudo-chromosomes

GSS

Whole genome

Database size

470 Mb

256 Mb

15 Mb

119 Mb

Total copies

399

697

11

70

(>80% similarity)

123

401

4

34

Average length of the GSS sequence

700 bp

N/A

700 bp

N/A

Estimated Genome Size [30]

696 Mb

529 Mb

1132 Mb

157 Mb

Estimated copies in the whole genome

1464

1440

2490

44

  1. BLASTn was performed at the local database (http://imcrop.snu.ac.kr).
  2. N/A: not applicable.