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Table 1 Marker name, gene homology, total number of SNPs, and number of transitions and transversions obtained in the sequenced region of the gene

From: Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci

SNP marker *

Gene homology

Sequenced region (bp)

Number of SNPs

Number of transitions

Number of transversions

Xibmsp01

Ribosomal protein S17 putative

160

1

0

1

Xibmsp02

Coproporphyrinogen III oxidase

350

2

1

1

Xibmsp03

CorA-like Mg2+ transporter protein

350

3

2

1

Xibmsp04

Hypothetical protein

425

5

5

0

Xibmsp05

Elongation factor TS

625

6

4

2

Xibmsp06

HCO3 transporter family

320

2

1

1

Xibmsp07

Serine carboxypeptidase III precursor

710

1

1

0

Xibmsp08

Serine carboxypeptidase

200

2

0

2

Xibmsp09

Uridylate kinase

680

6

4

2

Xibmsp10

Phosphatidylinositol 3-kinase

400

4

3

1

Xibmsp11

Acetyl CoA carboxylase

600

1

1

0

Xibmsp12

Acyl CoA oxidase

740

2

2

0

Xibmsp13

Potassium transporter

780

1

1

0

Xibmsp14

Serine-threonine protein kinase

690

1

1

0

Xibmsp15

Zinc finger C- × 8-C × 5-C × 3-H type

620

2

2

0

Xibmsp16

Pitrilysin

520

3

2

1

Xibmsp17

MAP kinase

500

1

0

1

Xibmsp18

CBL interacting protein kinase

580

4

2

2

Xibmsp19

2-oxoglutarate dehydrogenase E1 component

530

2

1

1

Xibmsp20

Succinyl-CoA ligase alpha subunit

590

4

3

1

Xibmsp21

Hypothetical protein

300

3

1

2

Xibmsp22

LHY

570

14

6

8

Xibmsp23

Hypothetical protein

200

2

0

2

Xibmsp24

Ubiquitin conjugating enzyme

460

2

2

0

Xibmsp25

Proteasome a-type and b-type

500

1

1

0

Xibmsp26

Catalase

270

4

4

0

Xibmsp27

Alanine glyoxylate aminotransferase

880

23

9

14

Xibmsp28

Glutaredoxin

750

4

3

1

Xibmsp29

Delta-1-pyrroline-5-carboxylate synthetase

680

1

1

0

Xibmsp30

FlO

330

1

1

0

Xibmsp31

HD3

370

1

1

0

Xibmsp32

Alcohol dehydrogenase 1

370

1

0

1

Xibmsp33

ABA response protein

470

3

2

1

Xibmsp34

MADS-box

330

1

1

0

Xibmsp35

MYC

370

1

1

0

Xibmsp36

Opaque 2

370

1

1

0

Xibmsp37

LEA

510

6

4

2

Xibmsp38

Vacuolar H+ ATPase subunit c

900

4

2

2

Xibmsp39

RAB

470

1

1

0

Xibmsp40

Anion channel protein

280

4

3

1

Xibmsp41

Hydroxyproline rich-glycoprotein

370

1

1

0

Xibmsp42

Expressed protein

500

3

2

1

Xibmsp43

Actin depolymerising factor

650

8

7

1

Xibmsp44

Photolyase

750

3

2

1

Xibmsp45

Expressed protein

200

4

4

0

Xibmsp46

Plectin/s10 domain

400

12

5

7

Xibmsp47

Hypothetical protein

650

8

5

3

Xibmsp48

Thioredoxin peroxidase

830

2

1

1

Xibmsp49

Atftsh2/8

540

4

2

2

Xibmsp50

Fatty acid desaturase

320

1

1

0

Xibmsp51

Hypothetical protein

320

5

4

1

Xibmsp52

Expressed protein

310

13

6

7

Xibmsp53

PSI reaction center subunit III

180

1

1

0

Xibmsp54

Eucaryotic initiation factor 4A

750

1

1

0

Xibmsp55

PHYC

350

3

1

2

Xibmsp56

Elongation factor

320

1

1

0

Xibmsp57

Zn finger WRKY

360

1

1

0

Xibmsp58

Fe-S precursor protein

440

1

1

0

Xibmsp59

Ycf68

420

1

0

1

Xibmsp60

Dipeptidyl peptidase IV

750

3

3

0

Xibmsp61

Peroxidase

380

6

4

2

Xibmsp62

Actin

530

9

5

4

Xibmsp63

AMP deaminase

360

6

3

3

  1. *The sequences of forward and reverse primers are provided in the supplementary Additional file 1: Table S1