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Table 5 The family of Deg/HtrA proteases in Chlamydomonas reinhardtii

From: The family of Deg/HtrA proteases in plants

Gene modela

Protein nameb

UniProtKB acc. no.c

aa

Domain arrangementd

Orthologs in other plants (this study)

Proposed protein name

Cre02.g088400

Deg1 Deg1A

A8I8X2

530

PD-PDZ

At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960

CrDeg1.1

Cre14.g630550

Deg13 -

-

555

PD-PDZ

At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960

CrDeg1.2

Cre12.g498500

Deg11 -

-

462

PD-PDZ

At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960

CrDeg1.3

Cre02.g092000

Deg2 Deg2

A8I9B8

656

PD-PDZ-PDZ

Deg2 Group

CrDeg2

Cre02.g110600

Deg5 Deg5

A8I3D5

356

PD

At4g18370 Os12g0616600 Pp1s63_93V2.1 POPTR_0011s02330

CrDeg5

Cre03.g180650

Deg7 Deg7

A8JH35

1108

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Os02g0712000 Pp1s237_5V2.1 Pp1s21_312V2.1 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720

CrDeg7

Cre01.g028350

Deg8 Deg8

A8HQB3

436

PD-PDZ

At5g39830 Os04g0459900 Pp1s31_48V2.1 POPTR_0004s13440

CrDeg8

Cre19.g752200e

- -

A8JBP6

1353

PD-betaglycan- hydrolase

At5g40200 Os02g0742500 Os06g0234100 Pp1s176_79V2.1 Pp1s1_200V2.1 POPTR_0015s08440 POPTR_0004s13440 At2g47940 Os05g0147500 Pp1s8_145V2.1 POPTR_0014s12970 POPTR_0020s00220

CrDeg9.1

Cre14.g617600

Deg9 Deg9

A8HNV3

619

PD-PDZ-PDZ

At5g36950 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940

CrDeg9.2

Cre01.g013300

Deg10 -

-

739

PD-PDZ-PDZ

At5g36950 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940

CrDeg10

Cre12.g548200

- -

A8IYE3 (fragment)

1249

NT-PD

At1g28320 Os05g0497700 Pp1s196_28V2.1 POPTR_0004s04650 POPTR_0011s05510

CrDeg15

Cre07.g332050

- -

A8IGX3 (fragment)

284

PD

n.a. – not a Deg?

 

Cre13.g579900

- -

-

415

PDia-PDZ-PDZ

n.a.

 

Cre03.g203730

- CrDegO

A8IXF5

789

PDia-PDZ

n.a.

 

Cre38.g785300

-

A8JG98

319

PDia

n.a.

 
  1. a According to the Phytozome v7.0 database (http://www.phytozome.net/). b First name according the Phytozome v7.0 database, second name according to UniprotKB (http://www.uniprot.org/). c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potantially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain. e Model is probably not correct, not supported by EST, repetetive stretches of single amino acids.
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BMC Plant Biology

ISSN: 1471-2229

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