A quadruple mutant of Arabidopsis reveals a β-carotene hydroxylation activity for LUT1/CYP97C1 and a regulatory role of xanthophylls on determination of the PSI/PSII ratio
- Alessia Fiore†1,
- Luca Dall'Osto†2,
- Stefano Cazzaniga2,
- Gianfranco Diretto1,
- Giovanni Giuliano1 and
- Roberto Bassi2, 3, 4Email author
© Fiore et al; licensee BioMed Central Ltd. 2012
Received: 27 November 2011
Accepted: 18 April 2012
Published: 18 April 2012
Xanthophylls are oxygenated carotenoids playing an essential role as structural components of the photosynthetic apparatus. Xanthophylls contribute to the assembly and stability of light-harvesting complex, to light absorbance and to photoprotection. The first step in xanthophyll biosynthesis from α- and β-carotene is the hydroxylation of ε- and β-rings, performed by both non-heme iron oxygenases (CHY1, CHY2) and P450 cytochromes (LUT1/CYP97C1, LUT5/CYP97A3). The Arabidopsis triple chy1chy2lut5 mutant is almost completely depleted in β-xanthophylls.
Here we report on the quadruple chy1chy2lut2lut5 mutant, additionally carrying the lut2 mutation (affecting lycopene ε-cyclase). This genotype lacks lutein and yet it shows a compensatory increase in β-xanthophylls with respect to chy1chy2lut5 mutant. Mutant plants show an even stronger photosensitivity than chy1chy2lut5, a complete lack of qE, the rapidly reversible component of non-photochemical quenching, and a peculiar organization of the pigment binding complexes into thylakoids. Biochemical analysis reveals that the chy1chy2lut2lut5 mutant is depleted in Lhcb subunits and is specifically affected in Photosystem I function, showing a deficiency in PSI-LHCI supercomplexes. Moreover, by analyzing a series of single, double, triple and quadruple Arabidopsis mutants in xanthophyll biosynthesis, we show a hitherto undescribed correlation between xanthophyll levels and the PSI-PSII ratio. The decrease in the xanthophyll/carotenoid ratio causes a proportional decrease in the LHCII and PSI core levels with respect to PSII.
The physiological and biochemical phenotype of the chy1chy2lut2lut5 mutant shows that (i) LUT1/CYP97C1 protein reveals a major β-carotene hydroxylase activity in vivo when depleted in its preferred substrate α-carotene; (ii) xanthophylls are needed for normal level of Photosystem I and LHCII accumulation.
Carotenoids are a group of C40 pigments that contain a conjugated double-bond system, leading to strong absorption of visible light and antioxidant properties. They are widely distributed among taxa, ranging from cyanobacteria and fungi to red and green algae and land plants . Xanthophylls are oxygenated carotenoids that play a crucial role in the photosynthetic apparatus of higher plants . Their composition in plants is remarkably conserved and consists of five major xanthophylls, the most abundant being the β-ε-xanthophyll lutein, and the four β-β-xanthophylls violaxanthin, neoxanthin, antheraxanthin and zeaxanthin . Xanthophylls act both as photoreceptors, absorbing light energy which is used in photosynthetic electron transport, and as photoprotectants of the photosynthetic apparatus from excess light and from the reactive oxygen species (ROS) generated during photosynthesis [4–7]. Moreover, they are structural elements of the photosynthetic apparatus: LHCII, the major light-harvesting complex (LHC) of Photosystem (PS) II, binds lutein, violaxanthin and neoxanthin at four distinct binding sites called respectively L1, L2, N1 and V1 ; the occupancy of L1 site was shown to be essential for protein folding .
The strong phenotypes of mutants with altered xanthophyll composition imply that the presence and relative amounts of these pigments have a key role for plant fitness. The lut2 mutant, affected in ε-ring formation, lacks lutein  and shows a complex phenotype with reduced antenna size, photodamage in high light (HL) due to impaired chlorophyll triplet quenching  and decrease of non-photochemical quenching (NPQ) . Additional features include over-accumulation of zeaxanthin in HL with respect to wild-type and monomerization of LHCII. Lack of both lutein and zeaxanthin further decreases the capacity for photoprotection in both Arabidopsis and Chlamydomonas [16, 18–20]. The double chy1chy2 mutant, in which the two non-heme β-hydroxylases are deleted, shows reduced levels of β-β-xanthophylls and decreased resistance to photooxidation . Introduction of the lut5 mutation in the chy1chy2 background leads to the almost complete disappearance of β-xanthophylls and strong photosensitivity [6, 12, 14]. Neoxanthin preserves PSII from photoinactivation by superoxide anions  while violaxanthin and zeaxanthin show enhanced activity in singlet oxygen scavenging . In order to further detail the effects of altered xanthophyll composition on the organization of photosynthetic complexes and gain understanding on the regulatory events controlling xanthophyll biosynthesis in Arabidopsis, we have introduced the lut2 mutation in the semi-lethal chy1chy2lut5 background. Surprisingly, the chy1chy2lut2lut5 mutant shows increased presence of β-β-xanthophylls with respect to chy1chy2lut5. The PSI/PSII ratio in this mutant is severely decreased as well as the level of total xanthophyll accumulation, suggesting that the latter have a key role, beside photoprotection, in regulating photosystem stoichiometry.
Construction of the chy1chy2lut2lut5 quadruple mutant
To generate the quadruple mutant chy1chy2lut2lut5, the homozygous triple mutant chy1chy2lut2 was crossed with the homozygous single mutant lut5 . All T-DNA insertions were in the Columbia background and appropriate oligonucleotides were used to confirm the presence of the insertions and their homozygous vs. heterozygous state (Additional file 1: Figure S1 and Additional file 1: Table S1) . The mutant was maintained as a triple homozygous, single heterozygous stock: two different parental genotypes were used, heterozygous for either LUT5/CYP97A3 or CHY2, with similar results (Additional file 1: Figure S2). The lut2 and chy1chy2lut5 lines were included in this characterization, representing respectively the lutein-less and β-xanthophyll-less controls. When selfed, the progeny of each single heterozygous stock, as well as wild-type, chy1chy2lut5 and lut2 seeds, were grown under low light conditions (30 μmol photons m-2 s-1) both in agar plates containing sucrose (see Methods) and in soil. No quadruple homozygous mutants were recovered in soil after 1 week of growth, while the progeny segregated in a 1:3 ratio for white: green seedlings in agar plates. Wild type and lut2 plants did not display a visible phenotype after 6 weeks of growth in agar plates, whereas mutants chy1chy2lut5 and chy1chy2lut2lut5 showed, respectively, reduced growth and paler leaves (Figure 1A-D).
Pigment content of leaf tissue from wild-type and mutant genotypes
3.2 ± 0.5a, b
3.3 ± 0.8a, b
801 ± 88a
244 ± 51a
3.2 ± 0.2a
3.3 ± 0.7a, b
742 ± 79a
222 ± 38a
3.9 ± 0.3b
3.4 ± 0.7a
569 ± 76b
166 ± 25b
7.9 ± 0.3c
2.1 ± 0.4b
303 ± 42c
146 ± 21b
HPLC analysis of leaf carotenoid content (μg/g FW) in dark-adapted plants
Carotenoid content (μg/g FW)
18.6 ± 1.6a
44.1 ± 5.8a
105.6 ± 22.4a
4.4 ± 0.6a
62.1 ± 14.8a
62.7 ± 6.0a
2.5 ± 0.7a
22.1 ± 0.7b
94.7 ± 4.9b
14.6 ± 1.4a
5.0 ± 0.6a
74.9 ± 5.1a
136.4 ± 5.1b
1.8 ± 0.1a
0.3 ± 0.2c
0.9 ± 0.6c
69.1 ± 4.7b
51.0 ± 2.7b
42.8 ± 1.4b
1.2 ± 0.6c
0.7 ± 0.1b
8.4 ± 0.1d
13.6 ± 0.2d
8.5 ± 0.1b
3.4 ± 0.1b
109.4 ± 2.3c
33.9 ± 0.3d
0.3 ± 0.1c
β-carotene accumulation is expected in chy1chy2lut2lut5, in which the biosynthetic flux is diverted towards the β-β-branch by the lack of three out of four β-carotene hydroxylases (CHY1, CHY2 and CYP97A3/LUT5) (Figure 1E); however, β-β-xanthophyll accumulation in this mutant suggests that the fourth hydroxylase (CYP97C1/LUT1) is more active toward β-carotene in this background than in the chy1chy2lut5 parent, resulting in 28-fold higher levels of β-β-xanthophylls.
Photosynthesis-related functions: PSII quantum efficiency and non-photochemical quenching of chlorophyll fluorescence
Analysis of room temperature chlorophyll fluorescence during steady-state photosynthesis
0.81 ± 0.03a
0.17 ± 0.05a
0.80 ± 0.02a
0.12 ± 0.01a, b
0.68 ± 0.02b
0.07 ± 0.01c
0.51 ± 0.10c
0.08 ± 0.05b, c
Photosensitivity under short-term stress conditions
When photosynthetic organisms are exposed to light in excess, photo-oxidative stress occurs within the chloroplast, with production of ROS such as singlet oxygen (1O2), leading to oxidative damages to a large variety of biomolecules.
Organization and stoichiometry of pigment binding complexes
The chy1chy2lut5 pattern was very similar to that of wild-type, showing no major qualitative changes in the organization of the photosynthetic apparatus: the main differences consisted in a higher PSII core/Lhcb ratio and a lower content in PSII supercomplexes (B7) . In the genotypes lacking lutein, namely lut2 and chy1chy2lut2lut5, the trimeric organization of LHCII was disrupted, as previously described . However, thylakoid membranes isolated from chy1chy2lut2lut5 plants showed additional features, namely the complete absence of bands 3, 4 and 7; bands 2 and 6 were much less represented than in wild-type, while PSII core complex was the most abundant among pigment-protein complexes (Figure 5A).
In order to obtain sufficient amounts of pigment-protein complexes for further analysis, solubilized thylakoids from wild type and mutants were fractionated by sucrose gradient ultracentrifugation (Figure 5B); the results confirmed that trimeric LHCII band, as well as the CP29-CP24-LHCII supercomplex completely disappeared in the chy1chy2lut2lut5 mutant; further differences consisted into reduced levels of monomeric Lhcb (band 2) and a much higher PSII/PSI ratio (band 5 vs. band 6) with respect to the other genotypes. The reduction of monomeric Lhcbs in the chy1chy2lut2lut5 mutant occurs in spite of the presence of the lut2 mutation, which favors LHCII monomerization (compare band 2 in wild type vs. lut2 and in chy1chy2lut5 vs. chy1chy2lut2lut5, Figure 5B).
Fractions collected from the sucrose gradients of wild-type and chy1chy2lut2lut5 (bands 2-6) were further characterized by SDS-PAGE using two buffer systems (Figure 6A) and by absorption spectroscopy (Additional file 1: Figure S3). According to previous results with α-DM, SDS-PAGE analyses of wild-type fractions showed that band 2 contained the minor antennae CP29, CP26 and CP24 as well as components of monomerized LHCII, while band 3 contained Lhcb1-3 polypeptides only (Figure 6A, left panel) . Band 5 was enriched in PSII core complex (Figure 6A, right panel) , nevertheless the Chl b absorption (Additional file 1: Figure S3) suggests it retains Lhcb proteins; band 6 contained almost exclusively the PSI-LHCI complex (Figure 6A, right panel and Additional file 1: Figure S3) . Band 2 from chy1chy2lut2lut5 contained the same polypeptides as the corresponding band from wild-type, although the relative amounts of the Lhcb1-3 polypeptides and CP26 were decreased (Figure 6A, left panel). The data confirm that LHCII is present in the mutant, however in far lower amounts than in wild-type, and is in its monomeric aggregation state. Band 5 from the mutant contained almost exclusively PSII core complex polypeptides (Figure 6A and Additional file 1: Figure S3), band 6 from the mutant contained PSI-LHCI.
The levels of selected proteins in wild-type and chy1chy2lut2lut5 thylakoids were determined by quantitative western-blot analysis using PsbB (CP47) as internal control (Figure 6B): all Lhcb subunits were reduced in chy1chy2lut2lut5 with respect to wild-type thylakoids; PsbA (D1), OEC-33 and PsbS, subunits of the PSII core complex, were present in the same level in both genotypes, while cytochrome f and ATPase β-subunit were in higher amounts in chy1chy2lut2lut5. Immunoblotting using PsaA as internal standard showed that each Lhca protein was present in wild-type amounts, thus suggesting that the Lhca/PSI ratio is conserved in the mutant. In contrast, the PSI/PSII ratio was extremely low in chy1chy2lut2lut5, reaching approximately 22% of wild-type value (Figure 6B).
The data shown above indicate that xanthophyll depletion in the chy1chy2lut2lut5 plants causes a strong reduction in the amount of Lhcb proteins per PSII reaction center, and has a negative impact on the total amount of the PSI-LHCI supercomplex. The latter result is unexpected, since xanthophylls are mainly bound to Lhc complexes while core complexes of both photosystems only bind carotenes, implying that xanthophyll abundance should not affect their folding or stability.
In this work, we analyzed the modifications of the photosynthetic apparatus in the Arabidopsis mutant chy1chy2lut2lut5, that accumulates β-xanthophylls despite disruption of the three chy1, chy2 and lut5 genes encoding carotene hydroxylases. In this mutant the only carotene hydroxylase activity is provided by the LUT1 gene product, which allows for accumulation of only 20% of the wild-type xanthophylls. In these conditions, biogenesis of the photosynthetic apparatus was strongly affected yielding into a reduction of PSII antenna size, a decrease of PSI/PSII ratio and an increased photosensitivity.
LUT1 as a β-carotene hydroxylase
LUT1 was originally reported to be only gene product required for the ε-ring hydroxylation of α-carotene . The first indication of a possible involvement of LUT1 in β-ring hydroxylation came from the analysis of the chy1chy2lut5 triple mutant, which accumulates lutein (β-ε-dihydroxy-carotene), providing genetic evidence that LUT1 must be also active in the hydroxylation of the β-ring of α-carotene . Introduction of the lut1 mutation in the chy1chy2lut5 triple mutant completely abolished xanthophyll biosynthesis, indicating that CHY1, CHY2, LUT1 and LUT5 constitute the full complement of carotenoid hydroxylases in Arabidopsis . A number of studies [11–14] have shown a functional redundancy amongst the carotene hydroxylase enzymes. However, the extent of recovery in xanthophyll content by mutants carrying a single carotene hydroxylase activity gave insights on the substrate preference of residual activity. As an example, trace amounts of β-β-xanthophylls, present in the chy1chy2lut5 triple mutant and abolished by the introduction of the lut1 mutation , led to the conclusion that LUT1 has a low level of activity toward the β-rings of β-carotene. Overall, in vivo analysis clearly showed that CHY1 and CHY2 are most active in β-carotene hydroxylation, while LUT1 and LUT5 enzymes catalyze preferentially the biosynthesis of α-xanthophylls . Here we show that, in the absence of α-carotene (whose synthesis is prevented by the lut2 mutation), LUT1 shows a major β-carotene hydroxylase activity, leading to the accumulation of substantial amounts of β-β-xanthophylls. Indeed, when considering the moles of hydroxylated β-rings accumulated in chy1chy2lut5 and chy1chy2lut2lut5 mutants, total amount is maintained upon introduction of the lut2 mutation into the chy1chy1lut5 background: ~0.125 μmol of hydroxylated β-rings/gFW in chy1chy2lut5 vs. ~0.118 μmol/gFW in chy1chy2lut2lut5 (Table 2). However, the total amount of xanthophylls per fresh weight is reduced significantly in chy1chy2lut2lut5 (-52%, see Table 2), while the carotene/xanthophyll ratio is increased (+57%). The most likely scenario is that LUT1 has a higher affinity towards ε-rings vs. β-rings and that, when α-carotene is available, LUT1 performs mainly ε-ring hydroxylation; however, since no ε-ring-substrates are available in the chy1chy2lut2lut5, the β-ring substrates are processed, thus bringing out this minor activity of the enzyme. Conversely, in the absence of the main hydroxylases for β-rings CHY1, CHY2 and LUT5, all β-rings become available for LUT1 activity in chy1chy2lut2lut5. A consequence of LUT1 operation on a less preferred substrate (i.e., β-carotene over α-carotene) is its reduced overall catalytic rate that limits the level of xanthophylls accumulated in the chy1chy2lut2lut5 genotype. It is worth noting that the β-hydroxylase activity does not discriminate between β-rings of α- and β-carotene; indeed, the total amount of hydroxylated β-rings per fresh weight is the same in both chy1chy2lut5 and chy1chy2lut2lut5. This evidence updates our knowledge on the molecular details of carotenoid hydroxylases, with respect to the view that LUT1 has only a low level of in vivo hydroxylase activity toward the β-carotene and a stronger activity towards α-carotene .
The concentration of β-carotene increased in the quadruple chy1chy2lut2lut5 mutant to a level higher than in the wild type (Table 2). This is the result of the combination of several factors: first, the lut2 mutation redirects the flux in the pathway towards the β-β-branch; this mutation alone is sufficient to cause a slight increase in β-carotene (Table 2). Moreover, the reduced hydroxylase activity due to the chy1, chy2 and lut5 mutations, reduces the rate of β-carotene processing into downstream xanthophylls (Figure 1E), favoring its accumulation. The almost 2-fold increase of the LUT1 transcript in the quadruple mutant with respect to the wild type (Figure 2) is insufficient to fully compensate for the disappearance of the CHY1, CHY2 and LUT5 hydroxylases, likely due to the low catalytic efficiency of LUT1 for β-rings.
Reduced xanthophyll content negatively affects energy-dependent quenching qE and photoprotection
The excess energy dissipation into heat (NPQ) is strongly depleted in the chy1chy2lut2lut5 mutant, its amplitude being close to zero (Figure 3). Since the level of PsbS, the pH sensitive trigger for NPQ  is similar to wild-type, this effect can be attributed to the low level of the interacting partners of PsbS where the actual quenching occurs, i.e. the Lhcb proteins [31–34], and to the lack of lutein which limit NPQ [16, 35]. All together these results support the correlation between xanthophyll content and amplitude of qE, previously indicated on the basis of antisense inhibition of beta hydroxylation . However, the high photosensitivity of chy1chy2lut2lut5 plants is likely to be caused by the failure of additional photoprotection mechanisms, since the npq4 mutant, although depleted in NPQ, only showed minor increase in photosensitivity .
The fast leaf chlorophyll bleaching (Figure 4A) and high levels of lipid peroxidation (Figure 4B) in chy1chy2lut2lut5 with respect to wild-type, lut2 and chy1chy2lut5 are likely due to the strong depletion in Lhcb proteins (Figure 6B). Xanthophylls are needed for folding of Lhc proteins in vitro , thus it is not surprising that a strong decrease in their availability leads to a decreased content in LHC. However, only Lhcb proteins are affected, while Lhca proteins are maintained with the same stoichiometry with respect to PSI reaction center, as shown by the identical migration rate of PSI-LHCI supercomplexes in sucrose gradients and native gels (Figure 5B) and by quantitative immunotitration of Lhca versus PsaA content (Figure 6B). As a result of the higher stability of Lhca vs. Lhcb proteins, PSI antenna function is maintained, while PSII antenna function is impaired. We conclude that in vivo carotenes cannot replace xanthophylls in stabilizing Lhcb proteins, thus leading to their strong reduction. Furthermore, this implies that functional Lhcb proteins are essential for photoprotection, in agreement with a previous report . Extreme reduction in Lhc proteins is obtained with the ch1 mutation in Arabidopsis, that impairs Chl b synthesis and prevents assembly of functional LHC . Although this mutant undergoes severe photoinhibition in high light, it can grow on soil and is not photoinhibited in moderate light . Thus ch1, with a PSII antenna size even smaller than that of chy1chy2lut2lut5, can survive in the absence of a reduced carbon source, a lethal condition for chy1chy2lut2lut5. We conclude that reduced LHC content, although likely contributing to sensitivity, cannot be the only reason for the extreme phenotype of chy1chy2lut2lut5.
Limitation in total xanthophyll availability affects light-harvesting complex content and PSI/PSII ratio
The analysis of the pigment-protein complexes in the chy1chy2lut2lut5 mutant shows that Lhcb proteins are strongly decreased with respect to PSII, while Lhca assembly into PSI-LHCI are much less, or not at all, affected (Figures 5, 6). A reduction in Lhcb proteins is also observed in the chy1chy2lut5 mutant, albeit to a lesser extent than in chy1chy2lut2lut5 . This effect is likely due to the incapacity of Lhcb proteins to fold in the absence of xanthophylls , while Lhca proteins can also bind small amounts of β-carotene [40, 41]. Instead, there is no evident reason for the 5-fold decrease in PSI/PSII ratio (Figure 7): since Lhca proteins are maintained with the same stoichiometry with respect to PSI reaction center and thus likely contribute to the complex stability (Figures 5 and 6B), such a strong decrease of PSI is not expected. The dependence of PSI/PSII ratio on the xanthophyll/carotenoid ratio of different genotypes contrasts with the fact that both PSI core and PSII core complexes bind β-carotene  which is fully available in chy1chy2lut2lut5, as well as in the other genotypes carrying mutations in xanthophyll biosynthesis (Figure 7).
Alternatively, it can be hypothesized that PSI level might be limited by the amount of LHCI available. However, three lines of evidence are against the hypothesis that PSI depletion is a secondary effect of a limitation in LHCI:
2) P700+ is not such a strong oxidizer as P680+, therefore photooxidative damages to PSI require very strong irradiance . We have grown chy1chy2lut2lut5 and other genotypes (Figure 7) under moderate light, a condition that did not affect PSI activity in ch1 mutants . Thus it is unlikely that a fraction of assembled PSI core complexes are destroyed due to lack of the LHCI moiety.
3) The capacity of LHCI to fold by binding both xanthophylls and β-carotene  makes these subunits less limited in their possibility to fold into pigment-protein complexes than Lhcb proteins.
We conclude that a tight correlation exists in plant thylakoids between PSI accumulation and xanthophyll availability which is not due to either direct stabilization of the complex by xanthophylls or by photoxidative stress. PSI and PSII core complex steady state level could be limited by chlorophyll availability, while a co-regulation of chlorophyll and carotenoid accumulation has been reported . Nevertheless, the reduced amount of Chls in carotenoid biosynthesis mutants appears to be mainly due to de-stabilization of the carotenoid/chlorophyll-binding proteins . Analysis of chlorophyll biosynthesis mutants  showed that PSI accumulation is less reduced than PSII accumulation, suggesting that the strong effect on PSI we observed in chy1chy2lut2lut5 is not due to limitation in Chls supply. The effect of norflurazon treatment, which shows a preferential effect on PSII activity , further suggests that the phenotype we observe is specific for PSI core and is specifically caused by xanthophyll depletion. The lack of xanthophylls in PSI core, however, suggests this specific effect must be indirect. One possibility is that xanthophylls, or their metabolites, control either PSI synthesis or degradation. A number of factors are involved in the synthesis of PSI and PSII subunits, either bound to the thylakoid membrane or soluble in the chloroplast stroma, that could be considered as tentative targets of regulation, including srp and ftsy [50, 51] or ATAB2 protein . Alternatively, carotenoid catabolites with regulatory roles  could be responsible for this effect. However, while the identification of the mechanisms underlying the down-regulation of PSI synthesis under limiting xanthophylls is beyond the scope of this manuscript, it is interesting to consider the implications that such a regulation would have on the function of the photosynthetic apparatus:
b) while PSII reaction centers are subjected to rapid turn-over and their level readily adjusted to environmental conditions, PSI is much more stable, thus requiring specific mechanisms for its down-regulation in limiting light. Lhcbs bind large amounts of xanthophylls and are strongly regulated depending on light intensity. Coupling PSI to xanthophyll levels would provide a mechanism for coordinated regulation of PSII antenna size and PSI/PSII ratio, a phenomenon observed in many species .
One of the most noticeable results of recent work on the plant carotenoid biosynthesis pathway is the high level of redundancy in carotene hydroxylation, which is found to be catalyzed by 4 different enzymes. Here we show that the LUT1 protein, previously reported to act in α-carotene hydroxylation, has a major β-carotene hydroxylation activity, which is evidenced in the α-carotene-less genetic background of the chy1chy2lut2lut5. Surprisingly, in this mutant LHCI proteins are maintained with the same stoichiometry with respect to PSI reaction center. Unexpectedly, in spite of its correct folding, PSI reaction center is drastically reduced in chy1chy2lut2lut5 with respect to wild type, a condition that cannot be explained by a limitation in the availability of its LHCI moiety. Upon analysis of genotypes having different xanthophyll/carotenoid ratios, we show that xanthophyll availability correlates with PSI/PSII ratio within a wide range. The molecular mechanism(s) underlying regulation of both PSII antenna size and PSI/PSII ratio, alleviating PQ over-reduction during acclimation to excess light conditions, are being investigated.
Plant material and growth conditions
T-DNA insertion mutants were identified in the Syngenta and Salk collections. The knock-out lines mentioned in the article can be obtained from the NASC under the stock numbers N862308 (CHY1), N845663 (CHY2), N629724 (LUT1), N505018 (LUT2), N616660 (LUT5). Double and triple mutants were obtained as described . To generate the quadruple mutant chy1chy2lut2lut5, the triple mutant chy1chy2lut2 and the single mutant lut5 were crossed, and F1 seeds were grown and self-fertilized to obtain the F2 generation. The genotype of the F2 individual seeds was checked by PCR using gene-specific and T-DNA primers . We used two different parental genotypes for selection of the quadruple gene knockout (chy1chy1chy2CHY2lut2lut2lut5lut5 and chy1chy1chy2chy2lut2lut2lut5LUT5) identified by PCR from a segregating F2 population of a chy1chy1chy2chy2lut2lut2LUT5LUT5 x CHY1CHY1CHY2CHY2LUT2LUT2lut5lut5 cross. Progeny from each quadruple mutant parent genotype were analyzed on Petri plates containing 0.5× MS medium, 3.0% sucrose and 0.9% agar under a photoperiod of 16 h light (30 μmol photons m-2 s-1). The genotypes of putative quadruple mutants were confirmed by PCR .
In vivo fluorescence and NPQ measurements
Non-photochemical quenching of chlorophyll fluorescence (NPQ), its components qE and qI, and PSII yield (ΦPSII) was measured on whole leaves at RT (room temperature, 22°C) with a PAM 101 fluorometer (Walz, Germany). Leaves were given either 7 or 20 min of illumination in saturating CO2, and 15 min of dark-relaxation. Parameters were calculated during steady state photosynthesis according to .
LC-MS analysis of leaf pigments
Chlorophyll/carotenoid extraction, LC separation and photodiode array were performed as previously described with slight modifications (Fraser et al., 2000). Briefly, 2-3 mg of ground lyophilized leaf powder were extracted with chloroform (spiked with 100 mg/l α-tocopherol acetate as internal standard) and methanol (2:1 by volume), 1 volume of 50 mM Tris buffer (pH 7.5, containing 1 M NaCl) was added and samples were kept 20 min on ice. After centrifugation (15,000 g for 10 min at 4°C), the organic hypophase was removed and the aqueous phase was re-extracted with spiked chloroform (2 by volume). Combined organic phases were then dried by speedvac and resuspended in 100 μl of ethyl acetate. For each genotype, at least four independent extractions were performed. LC-MS analyses were carried out using a Discovery LTQ-Orbitrap mass spectrometry system (Thermo Fischer Scientific) operating in negative mode-atmospheric pressure chemical ionization (APCI), coupled to an Accela U-HPLC system (Thermo Fischer Scientific, Waltham, MA). LC separations were performed using a C30 reverse-phase column (250 × 4.6 mm) purchased from YMC (YMC Europe GmbH, Schermbeck, Germany). The mobile phases used were methanol (A), water/methanol (20/80 by volume), containing 0.2% ammonium acetate (B), and tert-methyl butyl ether (C). The gradient was: 95%A:5%B for six minutes, followed by 80%A:5%B:15%C for 14 min and by a linear gradient to 30%A:5%B:65%C over 16 min. Detection was performed continuously from 220 to 700 nm with an online Accela Surveyor photodiode array detector (PDA, Thermo Fischer Scientific, Waltham, MA). All solvents used were LC-MS grade quality (CHROMASOLV® from Sigma-Aldrich). Carotenoids were quantified on the basis of the internal standard amounts, obtained by through comparison with peak areas of known amounts of external standard LC-MS runs; data were then normalized on spectrophotometric chlorophyll contents. For APCI-MS ionization of xanthophylls (0-14 min of LC-MS run), nitrogen was used as sheath and auxiliary gas which were set to 25 and 5 units, respectively while the vaporizer temperature was 350°C, the capillary temperature was 250°C, the discharge current was set to 6.5 μA, the capillary voltage and tube lens settings were -2050 V and -77 V, respectively. APCI-MS ionization of carotenes (14-30 min of LC-MS runs) was performed with the following parameters: 40 and 10 unites of, respectively, nitrogen sheath and auxiliary gas; 250°C for vaporizer and capillary temperatures, 5.0 μA as discharge current, -30 and -110 as, respectively, capillary voltage and tube lens settings. Identification was performed by through comparison of chromatographic and spectral properties of authentic standards and reference spectra (Britton et al., 2004), and on the basis of the m/z accurate masses, as reported on Pubchem database http://pubchem.ncbi.nlm.nih.gov/ for monoisotopic masses identification, or on Metabolomics Fiehn Lab Mass Spectrometry Adduct Calculator http://fiehnlab.ucdavis.edu/staff/kind/Metabolomics/MS-Adduct-Calculator/ in case of adduct ion detection.
Thylakoids were isolated from leaves as previously described . Membranes (70 μg of chlorophylls) were washed twice with 5 mM EDTA, 20 mM Hepes pH 7.8, then solubilized in 150 μl of 0.8% α-Dodecyl-maltoside (α-DM), 10 mM HEPES pH 7.5. Solubilized samples were then fractionated by ultracentrifugation (5.5 h at 60,000 rpm, 4°C) in a 0.1-1 M sucrose gradient containing 0.06% α-DM.
SDS-PAGE analysis was performed with either the Tris-Tricine or the Tris-Glycine buffer systems as previously described . Non-denaturing Deriphat-PAGE was performed as described by . For immunotitration, thylakoid samples corresponding to 0.05, 0.1, 0.25 and 0.5 μg of chlorophyll were loaded for each sample and electroblotted on nitrocellulose membranes. Filters were incubated with specific antibodies and were detected with alkaline phosphatase-conjugated antibody . Gel images were quantified using GelPro 3.2 (Bio-Rad). Samples compared were loaded in the same slab gel.
Spectra were recorded on samples in 10 mM HEPES pH 7.5, 0.06% α-DM, 0.2 M sucrose, using an SLM-Aminco DW-2000 spectrophotometer at RT.
Determination of the sensitivity to photooxidative stress
Photooxidative stress was induced in detached leaves by a strong light treatment at low temperature. Detached leaves on wet filter paper were exposed to high light (900 μmol photons m-2 s-1, 5°C) for 3.5 h, then immediately frozen in liquid nitrogen. Photooxidative stress was assessed by measuring malondialdehyde (MDA) formation ; the thiobarbituric acid adduct MDA-(TBA)2 was quantified by HPLC .
Total RNA was isolated from frozen tissue and analyzed through Real Time RT-PCR using previously published methods . Three independent RNA extractions (from three pools of at least ten plants each) and three cDNAs (one for each RNA extraction) were used for the analyses; first strand cDNA was synthesized from 0.5 μg of RNA in 20 μl with oligo-dT(16) and Superscript II (Invitrogen). Real Time PCR was performed using an ABI PRISM 7000 instrument and the SYBR Green Master Mix kit (Applera). Standard dilution curves were performed for each gene fragment and all data were normalized for the β-TUBULIN transcript and for wild-type expression levels. Primers for Real Time experiments (Additional file 1: Table S1) were designed using the Primer Express v2.0 software and validated with the Amplify v3.1 software.
Significance analyses were performed using an analysis of variance with a pair-wise multiple comparison procedure in Origin. Error bars represent the standard deviation.
- PSI and PSII:
Photosystem I and II: respectively
- Chl a and b:
chlorophyll a and b: respectively
maximal PSII photochemical efficiency
gram of fresh weight
high pressure liquid chromatography - diode array detector - mass spectrometry
- Lhca and Lhcb:
light-harvesting complexes of PSI and PSII: respectively
antenna complex of photosystem I
major light-harvesting complex of PSII
ΔpH-dependent component of NPQ
reactive oxygen species
efficiency of PSII photochemistry.
Work supported by the Italian ministry of Research, special fund for basic research (PRIN 2008XB774B), and by the European Commission, Metapro project.
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