|  |  | Sequence (size and localisation) | Number of SNPs |  | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr | Gene | References | 5'-UTR | Exon | Intron | 3'-UTR | seq/gene size | 5'-UTR | Exon | Intron | 3'-UTR | total | QTL |
1 | VvLAR1 | [14] | - | 1008 | 412 | 65 | 1420/2980 | - | 21 | 9 | - | 30 | Skin: catT, mDP. Seed: concB, galEx, catT, epiT, Ftranscis_Ex, Ftranscis_all |
6 | VvF3'5'H 1.1 | - | 1296 | 50 | - | 1346/2325 | - | 4 | - | - | 4 | Skin: epiEx, egcEx, catT, mDP, F3pr35, Ftranscis_all | |
6 | VvF3'5'H 2.1 | - | 630 | 12 | 24 | 642/1932 | - | 3 | 0 | 0 | 3 | Skin: epiEx, egcEx, catT, mDP, F3pr35, Ftranscis_all | |
8 | VvMYB5a | [49] | 66 | 687 | 382 | 36 | 1069/1069 | 1 | 12 | 2 | 1 | 16 | Skin: concP, concB, concK, epiEx, egcEx, epiT, F3pr35. Seed: concB, catEx, catT, Ftranscis_T |
11 | VvMYBPA2 | [50] | 93 | 855 | 263 | 37 | 1148/1479 | - | 14 | 5 | - | 19 | No QTL |
13 | VvCHI1 | - | 440 | 216 | 54 | 656/1486 | - | 3 | 5 | 1 | 9 | Skin: concK, epiEx. Seed: concK, catT, Ftranscis_Ex, Ftranscis_all | |
13 | VvCHI2 | - | 206 | 452 | 46 | 658/2524 | - | 1 | 6 | - | 7 | Skin: concK, epiEx. Seed: concK, catT, Ftranscis_Ex, Ftranscis_all | |
15 | VvMYBPA1 | [52] | 384 | 861 | 87 | 1 0 | 948/948 | 8 | 11 | - | - | 19 | Seed: concP, catEx, Ftranscis_Ex |
18 | VvDFR | [17] | - | 425 | 194 | 111 | 619/2469 | - | 1 | - | 2 | 3 | Skin: egcEx. Seed: concP, concK, epiT |