From: Genome-wide association studies for agronomical traits in a world wide spring barley collection
Marker | Chr | Position | MAF | P-value | -log10(P) | R2 (%) | Effect | QTL | Reference QTL | Literature |
---|---|---|---|---|---|---|---|---|---|---|
SNP48 | 1H | 55.49 | 0.47 | 0.0288 | 1.56 | 0.34 | -2.19 | QTL1_TGW | Â | Â |
SNP56 | 1H | 61.53 | 0.26 | 0.0128 | 1.92 | 0.39 | Â | Â | Â | Â |
SNP62 | 1H | 66.70 | 0.25 | 0.0019 | 2.77 | 0.70 | 2.59 | QTL2_TGW | vrs 3 | [60] |
SNP68 | 1H | 72.43 | 0.09 | 0.0263 | 1.60 | 0.37 | Â | Â | Â | Â |
SNP76 | 1H | 87.62 | 0.21 | 0.0225 | 1.67 | 0.38 | Â | Â | Â | Â |
SNP78 | 1H | 88.23 | 0.26 | 0.0019 | 2.79 | 0.69 | 2.29 | QTL3_TGW | Â | Â |
SNP81 | 1H | 92.04 | 0.28 | 0.0208 | 1.70 | 0.38 | Â | Â | Â | Â |
SNP137 | 2H | 38.03 | 0.35 | 0.0259 | 1.61 | 0.40 | -1.20 | QTL4_TGW | Â | Â |
SNP171 | 2H | 63.53 | 0.10 | 0.006 | 2.26 | 0.50 | Â | Â | Â | Â |
SNP174 | 2H | 63.53 | 0.41 | 0.029 | 1.55 | 0.35 | 2.27 | QTL5_TGW | QTgw.pil-2H.2 | |
SNP175 | 2H | 63.53 | 0.10 | 0.006 | 2.26 | 0.50 | Â | Â | Â | Â |
SNP210 | 2H | 82.75 | 0.36 | 0.0081 | 2.13 | 0.51 | Â | Â | Â | Â |
SNP215 | 2H | 86.63 | 0.32 | 0.0267 | 1.59 | 0.38 | 1.33 | QTL6_TGW | vrs1 | [60] |
SNP245 | 2H | 117.91 | 0.42 | 0.0084 | 2.11 | 0.51 | -1.66 | QTL7_TGW | Â | Â |
SNP262 | 2H | 139.65 | 0.31 | 0.0091 | 2.07 | 0.49 | -1.62 | QTL8_TGW | Â | Â |
SNP305 | 3H | 47.09 | 0.16 | 0.0225 | 1.67 | 0.39 | 3.01 | QTL9_TGW | Â | Â |
SNP385 | 3H | 98.49 | 0.37 | 0.0131 | 1.91 | 0.45 | 1.94 | QTL10_TGW | Â | [60] |
SNP395 | 3H | 111.42 | 0.37 | 0.0302 | 1.54 | 0.36 | -1.35 | QTL11_TGW | QTgw.S42-2H.a | [73] |
SNP458 | 4H | 26.19 | 0.34 | 0.0224 | 1.67 | 0.40 | 1.75 | QTL12_TGW | int-c | |
SNP460 | 4H | 26.66 | 0.26 | 0.0034 | 2.52 | 0.63 | Â | Â | Â | Â |
SNP467 | 4H | 40.36 | 0.33 | 0.0007 | 3.21 | 0.74 | Â | Â | Â | Â |
SNP469 | 4H | 40.36 | 0.17 | 0.0006 | 3.28 | 0.82 | 2.52 | QTL13_TGW | QTgw.pil-4H.3 | [72] |
SNP643 | 5H | 110.26 | 0.10 | 0.0312 | 1.52 | 0.28 | -3.00 | QTL14_TGW | QTgw.pil-5H.2 | [72] |
SNP663 | 5H | 142.2 | 0.16 | 0.0004 | 3.45 | 0.87 | Â | Â | Â | Â |
SNP664 | 5H | 142.2 | 0.16 | 0.0002 | 3.79 | 1.00 | 4.47 | QTL15_TGW | QGwe.TaER-5H.2 | [74] |
SNP666 | 5H | 142.2 | 0.15 | 0.0012 | 3.00 | 0.74 | Â | Â | Â | Â |
SNP709 | 5H | 187.38 | 0.28 | 0.0082 | 2.12 | 0.50 | 2.02 | QTL16_TGW | QTgw.pil-5H.4 | [72] |
SNP739 | 6H | 43.83 | 0.08 | 0.016 | 1.82 | 0.43 | Â | Â | Â | Â |
SNP740 | 6H | 44.77 | 0.42 | 0.0041 | 2.43 | 0.6 | Â | Â | Â | Â |
SNP741 | 6H | 44.77 | 0.41 | 0.0064 | 2.23 | 0.55 | -1.91 | QTL17_TGW | Â | Â |
SNP770 | 6H | 55.94 | 0.31 | 0.003 | 2.58 | 0.54 | Â | Â | Â | Â |
SNP851 | 7H | 34.82 | 0.43 | 0.0056 | 2.29 | 0.52 | Â | Â | QGwe.HaTR- | Â |
SNP854 | 7H | 37.55 | 0.36 | 0.0277 | 1.58 | 0.32 | -1.88 | QTL18_TGW | 7H.1 | [75] |
SNP919 | 7H | 88.65 | 0.13 | 0.0164 | 1.81 | 0.43 | 3.01 | QTL19_TGW | Â | Â |
SNP934 | 7H | 129.91 | 0.24 | 0.0048 | 2.36 | 0.59 | 1.84 | QTL20_TGW | Â | Â |
SNP944 | 7H | 143.68 | 0.12 | 0.0315 | 1.52 | 0.27 | -1.37 | QTL21_TGW | QTw.HaTR-7H.1 | [72] |