From: Genome-wide association studies for agronomical traits in a world wide spring barley collection
Marker | Chr | Position | MAF | P-value | -log10(P) | R2 (%) | Effect | QTL | Reference QTL | Literature |
---|---|---|---|---|---|---|---|---|---|---|
SNP122 | 2H | 8.57 | 0.13 | 0.0016 | 2.80 | 0.94 | -5.64 | QTL1_PHT | Â | Â |
SNP136 | 2H | 33.74 | 0.35 | 0.0138 | 1.86 | 0.54 | Â | Â | Â | Â |
SNP137 | 2H | 38.03 | 0.35 | 0.0044 | 2.36 | 0.84 | -5.23 | QTL2_PHT | Ph2 | [66] |
SNP168 | 2H | 59.21 | 0.16 | 0.0229 | 1.64 | 0.46 | Â | Â | Â | Â |
SNP171 | 2H | 63.53 | 0.10 | 0.0155 | 1.81 | 0.51 | 6.73 | QTL3_PHT | HT (marker:B15c) | [67] |
SNP175 | 2H | 63.53 | 0.10 | 0.0155 | 1.81 | 0.51 | Â | Â | Â | Â |
SNP199 | 2H | 73.75 | 0.14 | 0.0224 | 1.65 | 0.49 | 4.72 | QTL4_PHT | sdw3 | [68] |
SNP200 | 2H | 74.37 | 0.25 | 0.0162 | 1.79 | 0.54 | Â | Â | Â | Â |
SNP254 | 2H | 130.01 | 0.20 | 0.0117 | 1.93 | 0.56 | -4.57 | QTL5_PHT | QHt.StMo-2H.2 | [69] |
SNP256 | 2H | 131.77 | 0.28 | 0.0175 | 1.76 | 0.5 | Â | Â | Â | Â |
SNP295 | 3H | 36.49 | 0.13 | 0.0124 | 1.91 | 0.55 | Â | Â | Â | Â |
SNP303 | 3H | 43.23 | 0.23 | 0.0083 | 2.08 | 0.61 | -5.57 | QTL6_PHT | QHt.HaMo-3H | |
SNP304 | 3H | 46.31 | 0.35 | 0.0141 | 1.85 | 0.54 | Â | Â | Â | Â |
SNP312 | 3H | 52.50 | 0.25 | 0.0002 | 3.55 | 1.15 | Â | Â | Â | Â |
SNP313 | 3H | 52.50 | 0.42 | 0.0220 | 1.66 | 0.48 | -5.80 | QTL7_PHT | uzu | Grain genes database |
SNP404 | 3H | 126.27 | 0.39 | 0.0129 | 1.89 | 0.55 | 4.11 | QTL8_PHT | sdw1/denso | |
SNP406 | 3H | 127.10 | 0.37 | 0.0061 | 2.21 | 0.65 | Â | Â | Â | Â |
SNP427 | 3H | 155.09 | 0.06 | 0.0120 | 1.92 | 0.56 | -2.68 | QTL9_PHT | Â | Â |
SNP429 | 3H | 162.15 | 0.06 | 0.0053 | 2.28 | 0.75 | Â | Â | Â | Â |
SNP519 | 4H | 80.79 | 0.18 | 0.0306 | 1.51 | 0.4 | 3.70 | QTL10_PHT | QHei.pil-4H.5 | [72] |
SNP575 | 5H | 50.27 | 0.31 | 0.0028 | 2.55 | 0.8 | 5.30 | QTL11_PHT | Â | Â |
SNP588 | 5H | 51.30 | 0.41 | 0.0159 | 1.80 | 0.5 | Â | Â | Â | Â |
SNP623 | 5H | 85.93 | 0.16 | 0.0164 | 1.79 | 0.51 | 4.95 | QTL12_PHT | Â | Â |
SNP643 | 5H | 110.26 | 0.10 | 0.0133 | 1.88 | 0.41 | -5.58 | QTL13_PHT | HT | [71] |
SNP654 | 5H | 132.63 | 0.44 | 0.0235 | 1.63 | 0.46 | -4.15 | QTL14_PHT | QHei.pil-5H.1 | [72] |
SNP722 | 6H | 12.54 | 0.42 | 0.0229 | 1.64 | 0.41 | -5.11 | QTL15_PHT | Â | Â |
SNP724 | 6H | 16.97 | 0.30 | 0.0033 | 2.48 | 0.8 | Â | Â | Â | Â |
SNP757 | 6H | 55.36 | 0.09 | 0.0060 | 2.24 | 0.64 | -8.54 | QTL16_PHT | Â | Â |
SNP766 | 6H | 55.36 | 0.32 | 0.0092 | 2.04 | 0.6 | Â | Â | Â | Â |
SNP831 | 6H | 124.85 | 0.28 | 0.0038 | 2.42 | 0.74 | -4.89 | QTL17_PHT | Â | Â |
SNP882 | 7H | 73.75 | 0.45 | 0.0210 | 1.68 | 0.46 | -4.23 | QTL18_PHT | HT | [71] |
SNP947 | 7H | 144.45 | 0.41 | 0.0301 | 1.52 | 0.43 | -3.77 | QTL19_PHT | Â | Â |