From: Genome-wide association studies for agronomical traits in a world wide spring barley collection
SNP | Chr | Position | MAF | P-value | -log10(P) | R2 (%) | Effect | QTL | Reference QTL | Literature |
---|---|---|---|---|---|---|---|---|---|---|
SNP111 | 1H | 128.14 | 0.19 | 0.0032 | 2.49 | 0.63 | -2.51 | QTL1_HD | HvFT3 | [61] |
SNP119 | 1H | 138.92 | 0.23 | 0.0198 | 1.70 | 0.33 | Â | Â | Â | Â |
SNP129 | 2H | 27.29 | 0.37 | 0.0099 | 2.00 | 0.38 | Â | Â | Â | Â |
SNP130 | 2H | 28.44 | 0.36 | 0.0080 | 2.10 | 0. 39 | -1.29 | QTL2_HD | PpdH1 | [62] |
SNP133 | 2H | 31.02 | 0.38 | 0.0280 | 1.55 | 0.39 | Â | Â | Â | [61] |
SNP135 | 2H | 33.73 | 0.10 | 0.0262 | 1.58 | 0.51 | Â | Â | Â | Â |
SNP142 | 2H | 41.66 | 0.27 | 0.0096 | 2.02 | 0.40 | Â | Â | Â | Â |
SNP148 | 2H | 53.53 | 0.34 | 0.0043 | 2.37 | 0.47 | -1.37 | QTL3_HD | Â | Â |
SNP170 | 2H | 63.53 | 0.32 | 0.0007 | 3.10 | 0.88 | Â | Â | Â | Â |
SNP174 | 2H | 63.53 | 0.41 | 0.0011 | 2.96 | 0.68 | Â | Â | Â | Â |
SNP177 | 2H | 63.53 | 0.32 | 0.0013 | 2.89 | 0.55 | Â | QTL4_HD | HvFT4/eam6 | |
SNP173 | 2H | 63.53 | 0.33 | 0.0033 | 2.48 | 0.53 | Â | Â | Â | Â |
SNP183 | 2H | 66.83 | 0.44 | 0.0265 | 1.58 | 0.39 | -2.32 | Â | Â | Â |
SNP191 | 2H | 71.12 | 0.44 | 0.0043 | 1.0061 | 0.0012 | Â | Â | Â | Â |
SNP196 | 2H | 73.04 | 0.10 | 0.0061 | 2.21 | 0.65 | Â | QTL5_HD | eps2 | [62] |
SNP199 | 2H | 73.75 | 0.14 | 0.0012 | 2.92 | 0. 49 | 2.53 | Â | Â | Â |
SNP242 | 2H | 115.78 | 0.39 | 0.0207 | 1.68 | 0. 54 | -1.98 | QTL6_HD | Â | Â |
SNP284 | 3H | 8.23 | 0.24 | 0.0111 | 1.95 | 0. 42 | -1.45 | QTL7_HD | Â | Â |
SNP340 | 3H | 59.89 | 0.35 | 0.0047 | 2.33 | 0. 38 | 1.80 | QTL8_HD | HvGI | [61] |
SNP520 | 4H | 82.42 | 0.32 | 0.0198 | 1.70 | 0.47 | -1.15 | QTL9_HD | Â | Â |
SNP543 | 4H | 123.29 | 0.26 | 0.0024 | 2.62 | 0.67 | -1.59 | QTL10_HD | Â | Â |
SNP559 | 5H | 39.97 | 0.46 | 0.0146 | 1.84 | 0.32 | -1.20 | QTL11_HD | HvCO3 | [65] |
SNP630 | 5H | 100.28 | 0.20 | 0.0203 | 1.69 | 0.58 | Â | Â | Â | Â |
SNP635 | 5H | 102.06 | 0.13 | 0.0278 | 1.56 | 0. 34 | -2.02 | QTL12_HD | Â | Â |
SNP636 | 5H | 103.92 | 0.28 | 0.0278 | 1.56 | 0. 35 | Â | Â | Â | Â |
SNP639 | 5H | 108.18 | 0.38 | 0.0236 | 1.63 | 0.53 | Â | Â | Â | Â |
SNP728 | 6H | 28.39 | 0.43 | 0.0132 | 1.88 | 0.28 | -1.43 | QTL13_HD | Â | Â |
SNP778 | 6H | 60.23 | 0.49 | 0.0306 | 1.51 | 0. 37 | -2.15 | QTL14_HD | Â | Â |
SNP829 | 6H | 124.85 | 0.33 | 0.0281 | 1.55 | 0. 37 | 1.52 | QTL15_HD | Â | Â |
SNP854 | 7H | 37.55 | 0.36 | 0.0060 | 2.22 | 0.57 | 2.50 | QTL16_HD | HvFT1 | |
SNP855 | 7H | 38.32 | 0.35 | 0.0009 | 3.01 | 0.54 | Â | Â | Â | Â |
SNP875 | 7H | 68.46 | 0.06 | 0.0180 | 1.74 | 0. 48 | -2.33 | QTL17_HD | Â | Â |
SNP908 | 7H | 84.92 | 0.35 | 0.0266 | 1.58 | 0. 37 | 1.66 | QTL18_HD | HvCO1 | |
SNP921 | 7H | 104.78 | 0.35 | 0.0131 | 1.88 | 0.59 | -1.79 | QTL19_HD | Â | Â |