From: Genome-wide association studies for agronomical traits in a world wide spring barley collection
SNP | Chr | Position | MAF | P-Value | -log10 (P) | R2 (%) | Effect | QTL | Reference QTL | Literature |
---|---|---|---|---|---|---|---|---|---|---|
SNP47 | 1H | 55.49 | 0.50 | 0.0044 | 2.36 | 0.78 | 0.74 | QTl1_CPC | Â | Â |
SNP97 | 1H | 114.84 | 0.25 | 0.0139 | 1.86 | 0.56 | -0.85 | QTL2_CPC | Â | Â |
SNP136 | 2H | 33.74 | 0.35 | 0.0310 | 1.51 | 0.45 | 0.39 | QTL3_CPC | QPc.nab-2H.1;Qcp2a | |
SNP170 | 2H | 63.53 | 0.32 | 0.0190 | 1.72 | 0.54 | Â | Â | Â | Â |
SNP173 | 2H | 63.53 | 0.33 | 0.0115 | 1.94 | 0.62 | 0.72 | QTL4_CPC | QGpc.StMo-2H.2 | |
SNP174 | 2H | 63.53 | 0.41 | 0.0055 | 2.26 | 0.74 | Â | Â | Â | Â |
SNP177 | 2H | 63.53 | 0.32 | 0.0116 | 1.94 | 0.61 | Â | Â | Â | Â |
SNP200 | 2H | 74.37 | 0.25 | 0.0071 | 2.15 | 0.72 | -0.56 | QTL5_CPC | Â | Â |
SNP205 | 2H | 78.03 | 0.40 | 0.0296 | 1.53 | 0.47 | Â | Â | Â | Â |
SNP226 | 2H | 96.82 | 0.23 | 0.0056 | 2.25 | 0.66 | -0.90 | QTL6_CPC | QPc.nab-2H.1 | [67] |
SNP227 | 2H | 96.82 | 0.19 | 0.0160 | 1.80 | 0.55 | Â | Â | Â | Â |
SNP244 | 2H | 116.49 | 0.24 | 0.0242 | 1.62 | 0.48 | -0.47 | QTL7_CPC | QGpc.HaMo-2H.2 | [75] |
SNP272 | 2H | 147.94 | 0.26 | 0.0103 | 1.99 | 0.62 | -0.52 | QTL8_CPC | Â | Â |
SNP305 | 3H | 47.09 | 0.16 | 0.0020 | 2.70 | 0.86 | -1.466 | QTL9_CPC | Â | Â |
SNP322 | 3H | 55.57 | 0.18 | 0.0093 | 2.03 | 0.64 | Â | Â | Â | Â |
SNP357 | 3H | 72.26 | 0.32 | 0.0159 | 1.80 | 0.51 | -0.47 | QTL10_CPC | Â | Â |
SNP401 | 3H | 122.14 | 0.24 | 0.0062 | 2.21 | 0.68 | 0.60 | QTL11_CPC | Qcp3a | [76] |
SNP409 | 3H | 130.82 | 0.41 | 0.0146 | 1.84 | 0.54 | Â | Â | Â | Â |
SNP518 | 4H | 79.58 | 0.45 | 0.0006 | 3.22 | 1.09 | -0.75 | QTL12_CPC | QGpc.HaTR-4H.2 | [77] |
SNP531 | 4H | 97.06 | 0.11 | 0.0281 | 1.55 | 0.45 | 0.79 | Â | Â | Â |
SNP534 | 4H | 101.62 | 0.16 | 0.0025 | 2.60 | 0.87 | Â | QTL13_CPC | QGpc.StMo-4H | [69] |
SNP537 | 4H | 108.70 | 0.21 | 0.0016 | 2.80 | 0.92 | Â | Â | Â | Â |
SNP616 | 5H | 74.78 | 0.51 | 0.0107 | 1.97 | 0.54 | -0.814 | QTL14_CP | QGpc.HaMo-5H | |
SNP623 | 5H | 85.93 | 0.16 | 0.0082 | 2.09 | 0.61 | Â | Â | Â | Â |
SNP643 | 5H | 110.26 | 0.10 | 0.0055 | 2.26 | 0.73 | 1.52 | QTL15_CPC | QGpc.DiMo-5H.2 | [78] |
SNP699 | 5H | 171.66 | 0.11 | 0.0219 | 1.66 | 0.53 | Â | QTL16_CPC | Â | Â |
SNP807 | 6H | 83.89 | 0.25 | 0.0020 | 2.70 | 0.91 | 0.67 | QTL17_CPC | Â | Â |
SNP844 | 7H | 12.42 | 0.10 | 0.0214 | 1.67 | 0.51 | 0.79 | QTL18_CPC | Â | Â |
SNP855 | 7H | 38.32 | 0.35 | 0.0019 | 2.72 | 0.91 | -0.86 | QTL19_CPC | Â | Â |
SNP860 | 7H | 46.19 | 0.26 | 0.0314 | 1.50 | 0.45 | Â | Â | Â | Â |
SNP871 | 7H | 61.32 | 0.24 | 0.0285 | 1.55 | 0.46 | -0.50 | QTL20_CPC | QPc.nab-7H | [67] |
SNP904 | 7H | 80.94 | 0.22 | 0.0036 | 2.44 | 0.85 | -0.68 | QTL21_CPC | QGpc.HaTR-7H | [77] |
SNP925 | 7H | 112.46 | 0.37 | 0.0210 | 1.68 | 0.49 | 0.41 | QTL22_CPC | Â | Â |
SNP930 | 7H | 121.09 | 0.07 | 0.00001 | 4.73 | 1.57 | 1.54 | QTL23_CPC | Â | Â |