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Table 1 Samples used in spatiotemporal gene expression profiling

From: Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice

No.

Sample ID

Organ/Tissue

Sampling details

Replicate

1

LB1

Leaf blade

27 days after transplanting_12:00

3

2

LB2

Leaf blade

27 days after transplanting_24:00

3

3

LB3

Leaf blade

76 days after transplanting_12:00

3

4

LB4

Leaf blade

76 days after transplanting_24:00

3

5

LB5

Leaf blade

125 days after transplanting_12:00

3

6

LB6

Leaf blade

125 days after transplanting_24:00

3

7

LS1

Leaf sheath

27 days after transplanting_12:00

3

8

LS2

Leaf sheath

27 days after transplanting_24:00

3

9

LS3

Leaf sheath

76 days after transplanting_12:00

3

10

LS4

Leaf sheath

76 days after transplanting_24:00

3

11

RO1

Root

27 days after transplanting_12:00

3

12

RO2

Root

27 days after transplanting_24:00

3

13

RO3

Root

76 days after transplanting_12:00

3

14

RO4

Root

76 days after transplanting_24:00

3

15

ST1

Stem

83 days after transplanting_12:00

3

16

ST2

Stem

83 days after transplanting_24:00

3

17

ST3

Stem

90 days after transplanting_12:00

3

18

ST4

Stem

90 days after transplanting_24:00

3

19

IN1

Inflorescence

Inflorescence length 0.6-1.0 mm

3

20

IN2

Inflorescence

Inflorescence length 3.0-4.0 mm

3

21

IN3

Inflorescence

Inflorescence length 5.0-10.0 mm

3

22

AN1

Anther

Anther length 0.3-0.6 mm

2

23

AN2

Anther

Anther length 0.7-1.0 mm

3

24

AN3

Anther

Anther length 1.2-1.5 mm

3

25

AN4

Anther

Anther length 1.6-2.0 mm

3

26

PI1

Pistil

Pistil from 05-10 cm inflorescence

3

27

PI2

Pistil

Pistil from 10-14 cm inflorescence

3

28

PI3

Pistil

Pistil from 14-18 cm inflorescence

3

29

LE1

Lemma

Lemma from 1.5-2.0 mm floret

3

38

PA1

Palea

Palea from 1.5-2.0 mm floret

3

31

LE2

Lemma

Lemma from 4.0-5.0 mm floret

3

32

PA2

Palea

Palea from 4.0-5.0 mm floret

3

33

LE3

Lemma

Lemma from >7.0 mm floret

3

34

PA3

Palea

Palea from >7.0 mm floret

3

35

OV1

Ovary

Ovary at 1 day after flowering_10:00

3

36

OV2

Ovary

Ovary at 3 days after flowering_10:00

3

37

OV3

Ovary

Ovary at 5 days after flowering_10:00

3

38

OV4

Ovary

Ovary at 7 days after flowering_10:00

3

39

EM1

Embryo

Embryo at 07 days after flowering_10:00

3

40

EM2

Embryo

Embryo at 10 days after flowering_10:00

3

41

EM3

Embryo

Embryo at 14 days after flowering_10:00

3

42

EM4

Embryo

Embryo at 28 days after flowering_10:00

3

43

EM5

Embryo

Embryo at 42 days after flowering_10:00

3

44

EN1

Endosperm

Endosperm at 07 days after flowering_10:00

3

45

EN2

Endosperm

Endosperm at 10 days after flowering_10:00

3

46

EN3

Endosperm

Endosperm at 14 days after flowering_10:00

3

47

EN4

Endosperm

Endosperm at 28 days after flowering_10:00

3

48

EN5

Endosperm

Endosperm at 42 days after flowering_10:00

3