From: Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
miRNA | Sequence source | Sequence ID | Sugarcane MIRgene | miRNA Mature Sequence | Location | NM (nt) | LP (nt) | MFEI | Conserved in rice |
---|---|---|---|---|---|---|---|---|---|
miR156a | EST | TC110664 | SsMIR156b/c | UGACAGAAGAGAGUGAGCAC | 5' | 0(0) | 411 | 0.81 | Yes |
miR159a | EST | TC79108 | SsMIR159 | UUUGGAUUGAAGGGAGCUCUG | 3' | 0(0) | 265 | 0.78 | Yes |
miR167a | EST | TC105794 | SsMIR167 | UGAAGCUGCCAGCAUGAUCUG | 5' | 0(0) | 193 | 0.93 | Yes |
miR168a | EST | TC97302 | SsMIR168 | UCGCUUGGUGCAGAUCGGGAC | 5' | 0(0) | 104 | 0.86 | Yes |
miR169 | EST | TC105581 | SsMIR169 | UAGCCAAGGAUGACUUGCCGG | 5' | 0(1) | 148 | 0.92 | Yes |
miR396a | EST | CA240723 | SsMIR396 | UUCCACAGCUUUCUUGAACUG | 5' | 0(0) | 134 | 1.02 | Yes |
miR827 | EST | CA215078 | SsMIR827 | UUAGAUGACCAUCAGCAAACA | 3' | 0(1) | 140 | 1.01 | Yes |
miR408a | EST | TC108481 | SsMIR408a | CUGCACUGCCUCUUCCCUGGC | 3' | 0(1) | 215 | 0.67 | Yes |
 | EST | TC74315 | SsMIR408b | CUGCACUGCCUCUUCCCUGGC | 3' | 0(1) | 283 | 0.80 | Yes |
miR437 | EST | CA185316c | SsMIR437a | AAAGUUAGAGAAGUUUGACUU | 3' | 0 | 195 | 1.36 | Yes |
 | EST | CA191146c | SsMIR437b | AAAGUUAGACAAGUUUGACAU | 3' | 2 | 233 | 0.92 | Yes |
 | EST | CA300436c | SsMIR437c | AAAGUUAGAGAAGUCUGACUU | 3' | 1 | 197 | 1.36 | Yes |
miR444 | EST | CA186150 | SsMIR444a | UGCAGUUGUUGCCUCAAGCUU | 3' | 0 | 105 | 1.31 | Yes |
 | EST | CA105916 | SsMIR444b | UGCAGUUGUUGCCUCAAGCUU/UUGUGGCUUUCUUGCAAGUUG | 3' | 0 | 132 | 1.24 | Yes |
 | EST | TC110432 | SsMIR444c | UGCAGUUGUUGUCUCAAGCUU/UGUUGUCUCAAGCUUGCUGCC | 3' | 0 | 152 | 1.20 | Yes |
miR528 | EST | CA290495 | SsMIR528 | UGGAAGGGGCAUGCAGAGGAG | 5' | 0 | 94 | 0.86 | Yes |
miR1128 | EST | CA222833c | SsMIR1128 | UACUACUCCCUCCGUCCCAAA | 5' | 1 | 275 | 1.17 | No |
miR1432 | BAC | FJ348731 | SsMIR1432 | CUCAGGAAAGAUGACACCGAC | 5' | 1 | 118 | 1.15 | Yes |
miR319b | EST | TC87836 | SsMIR319 | UUGGACUGAAGGGUGCUCCC | 3' | 0(0) | n.d. | n.d. | Yes |