From: Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy
 | 35 BACs | 23 BACs | Global assembly 57 BACs (two pools together) | Manual correction |
---|---|---|---|---|
No. of contigs a | 514 | 247 | 797 | - |
No. of bases in contigs | 3,936,343 | 2,325,066 | 6,127,262 | - |
Average contig size (bp) | 7,658 | 9,413 | 7,687 | - |
N50 contig size (bp) | 32,583 | 32,458 | 30,630 | - |
Largest contig size (bp) | 117,242 | 112,451 | 123,360 | - |
Q40 plus bases | 99.5% | 99.5% | 99.5% | - |
No. of scaffolds | 58 | 32 | 87 | 73 |
No. of scaffolds larger than 20 kb | 41 | 25 | 62 | 57 |
No. of bases in scaffolds | 4,040,161 | 2,307,575 | 6,206,490 | 6,340,685 |
Average scaffold size | 69,657 | 72,111 | 71,338 | 86,882 |
N50 scaffold size | 107,196 | 113,599 | 107,604 | 113,787 |
Largest scaffold size | 222,620 | 200,453 | 212,424 | 303,725b |
No. of unscaffolded contigs c | 479 | 234 | 798 | 744 |
No. of bases in unscaff. contigs | 224,871 | 121,734 | 417,982 | 382,726 |
Average unscaff. contig size | 469 | 520 | 524 | 514 |
Coverage | x46 | x25 | x39 | x39 |